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Table 1 List and description of NP-like genes within Populus trichocarpa used for quantitative gene expression analyses and qPCR primer information

From: Elucidating the evolutionary history and expression patterns of nucleoside phosphorylase paralogs (vegetative storage proteins) in Populusand the plant kingdom

Gene symbol

Gene name

Locus name Phytozome v2.2 (POPTR) and v3.0 (Potri)

Primers (5′-3′)

Product size (bp)

Annealing temp (°C)

PCR efficiency

BSP A

Bark Storage Protein A

POPTR_0013s10380

F: TGGAGAGAACTTGTTGGGGAC

81

55

1.981

Potri.013G100700

R: CAGAAAACTTCCTTGGGCG

BSP B

Bark Storage Protein B

POPTR_0013s10370

F: ATGTTCTCTCCAAGTGAAGCAC

130

57.6

1.981

Potri.013G082800

R: CGGGCAGGCATTTATCTG

BSP C

Bark Storage Protein C

POPTR_0013s10350

F: TTCGTGGTGTTCCAAGGTG

85

54

1.936

Potri.013G101000

R: AGGCGTTGTAGGAGGCTAAG

WIN4

Wound Induced 4

POPTR_0423s00200

F: AGGATTTTCGCCTGCTGG

64

62.6

2.032

Potri.013G080500 and/or Potri.013G082800

R: AATGAACTTGGCTGCGGC

PNI 288

Poplar nitrogen-regulated cDNA 288

POPTR_0019s07690

F: TGCCAATAGATTCAATGCCAC

60

55

1.976

Potri.019G050200

R: GAAGCCAAAGCAACAGCAG

VSP 87A

WIN-like VSP 87A

POPTR_0013s07850

F: TGAACGGAGAGAACTTGTTGGC R: AGGATGTGGTGCTGGGAAGC

105

54

1.912

Potri.013G082600

VSP 425

WIN-like VSP 425

POPTR_0013s07810

F: CAAATGTAGCAGGTGAAGCAAG

154

54

1.983

Potri.013G080400

R: TCAAACGACTCAGAAGCAGATAC

VSP XIII

WIN-like VSP XIII

POPTR_0013s07800

F: TCCAGGATTATCGCCTGCTA

110

55

2.040

Potri.013G080300

R: AATCCCATCACTCACAAGCC

VSP 840

WIN-like VSP 840

POPTR_0013s07840

F: CCTCCTACAATGCTTTCCTTGCTG

91

55

1.96

Potri.013G082700

R: GCAGATACAAAATCCCATCACTCAC

NP 157

NP-like 157

POPTR_0006s16610

F: GCTGTAGATGCTTCACTTAGGTTC

65

54.4

1.986

Potri.T096300

R: GCCTTATTCGGTAGTTCCAAC

NP 860

NP-like 860

POPTR_0008s02860

F: TCAAACGGGTATCCTGTGATTGTC

96

61

2.07

Potri.008G028500

R: TGCTAAGGGTCCAAATGTCTGG

NP 870

NP-like 870

POPTR_0008s02870

F: AGGGGATGGAACTGGAGAAGTG

102

60

2.01

Potri.008G028600

R: CCACGAAAATGTCTGCGGTTG

NP 880

NP-like 880

POPTR_0008s02880

F: GCTACCAGGATACAACTCTCCATTG

127

55

1.99

  

Potri.008G028700

R: GCTGAAGAACCCCTAAAGATGTCTC

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