Gene symbol | Gene name | Locus name Phytozome v2.2 (POPTR) and v3.0 (Potri) | Primers (5′-3′) | Product size (bp) | Annealing temp (°C) | PCR efficiency |
---|---|---|---|---|---|---|
BSP A | Bark Storage Protein A | POPTR_0013s10380 | F: TGGAGAGAACTTGTTGGGGAC | 81 | 55 | 1.981 |
Potri.013G100700 | R: CAGAAAACTTCCTTGGGCG | |||||
BSP B | Bark Storage Protein B | POPTR_0013s10370 | F: ATGTTCTCTCCAAGTGAAGCAC | 130 | 57.6 | 1.981 |
Potri.013G082800 | R: CGGGCAGGCATTTATCTG | |||||
BSP C | Bark Storage Protein C | POPTR_0013s10350 | F: TTCGTGGTGTTCCAAGGTG | 85 | 54 | 1.936 |
Potri.013G101000 | R: AGGCGTTGTAGGAGGCTAAG | |||||
WIN4 | Wound Induced 4 | POPTR_0423s00200 | F: AGGATTTTCGCCTGCTGG | 64 | 62.6 | 2.032 |
Potri.013G080500 and/or Potri.013G082800 | R: AATGAACTTGGCTGCGGC | |||||
PNI 288 | Poplar nitrogen-regulated cDNA 288 | POPTR_0019s07690 | F: TGCCAATAGATTCAATGCCAC | 60 | 55 | 1.976 |
Potri.019G050200 | R: GAAGCCAAAGCAACAGCAG | |||||
VSP 87A | WIN-like VSP 87A | POPTR_0013s07850 | F: TGAACGGAGAGAACTTGTTGGC R: AGGATGTGGTGCTGGGAAGC | 105 | 54 | 1.912 |
Potri.013G082600 | ||||||
VSP 425 | WIN-like VSP 425 | POPTR_0013s07810 | F: CAAATGTAGCAGGTGAAGCAAG | 154 | 54 | 1.983 |
Potri.013G080400 | R: TCAAACGACTCAGAAGCAGATAC | |||||
VSP XIII | WIN-like VSP XIII | POPTR_0013s07800 | F: TCCAGGATTATCGCCTGCTA | 110 | 55 | 2.040 |
Potri.013G080300 | R: AATCCCATCACTCACAAGCC | |||||
VSP 840 | WIN-like VSP 840 | POPTR_0013s07840 | F: CCTCCTACAATGCTTTCCTTGCTG | 91 | 55 | 1.96 |
Potri.013G082700 | R: GCAGATACAAAATCCCATCACTCAC | |||||
NP 157 | NP-like 157 | POPTR_0006s16610 | F: GCTGTAGATGCTTCACTTAGGTTC | 65 | 54.4 | 1.986 |
Potri.T096300 | R: GCCTTATTCGGTAGTTCCAAC | |||||
NP 860 | NP-like 860 | POPTR_0008s02860 | F: TCAAACGGGTATCCTGTGATTGTC | 96 | 61 | 2.07 |
Potri.008G028500 | R: TGCTAAGGGTCCAAATGTCTGG | |||||
NP 870 | NP-like 870 | POPTR_0008s02870 | F: AGGGGATGGAACTGGAGAAGTG | 102 | 60 | 2.01 |
Potri.008G028600 | R: CCACGAAAATGTCTGCGGTTG | |||||
NP 880 | NP-like 880 | POPTR_0008s02880 | F: GCTACCAGGATACAACTCTCCATTG | 127 | 55 | 1.99 |
 |  | Potri.008G028700 | R: GCTGAAGAACCCCTAAAGATGTCTC |  |  |  |