Skip to main content

Table 4 Identified putative novel miRNA and read counts of the miRNA in the six libraries

From: Genome-wide identification of alternate bearing-associated microRNAs (miRNAs) in olive (Olea europaeaL.)

Novel ID

Location

Strand (+/−)

Energy (kcal/mol)

Sequence of 5p

Sequence of 3p

UF

RF

NON

JON

NOFF

JOFF

(count)

(count)

(count)

(count)

(count)

(count)

5p

3p

5p

3p

5p

3p

5p

3p

5p

3p

5p

3p

oeu_mir_1

scaffold_10:17226129:17226207

+

−27.20

AAGAAGAAGAAGAACGAUGCCUC

-

15

-

15

-

-

-

-

-

-

-

-

-

oeu_mir_2

scaffold_10:20223072:20223157

−36.30

-

AUUCGGUUCGGUUCGGUUCGGUU

100

117

-

33

32

50

-

45

74

71

53

58

oeu_mir_3

scaffold_14:15500470:15500726

−49.71

-

UGUCGACAUAGAAAUGAUUGGC

-

13

-

-

-

-

-

-

-

-

-

-

oeu_mir_4

scaffold_16:5755707:5756007

−69.50

-

UCUUUGGAUUGUUUAACAUGGUA

-

10

-

-

-

-

-

-

-

-

-

-

oeu_mir_5

scaffold_16:12916010:12916345

−42.40

-

UGAUGAUGAUGAUGACGACGACA

-

14

-

-

-

-

-

-

-

-

-

5

oeu_mir_6

scaffold_19:8213709:8214023

+

−50.83

UCUGAUACCAACUGAUGUGAACC

UCUGAUACCAACUGAUGUGAACC

5

5

-

-

-

-

-

-

-

-

-

-

oeu_mir_7

scaffold_19:15701744:15701856

+

−32.20

UCUGUGUACAAUAAGCCGAUGCU

-

59

-

6

-

-

-

-

-

-

-

-

-

oeu_mir_8

scaffold_1:34545837:34545992

+

−37.10

AGUAGAAGACGCUCUGGUGAG

-

10

-

-

-

-

-

-

-

7

-

-

-

oeu_mir_9

scaffold_1:387325:387591

−88.20

UGAUUGAGCCGCGCCAAUAUC

-

51

-

39

-

-

-

-

-

-

-

-

-

oeu_mir_10

scaffold_1:12533361:12533445

−25.40

UCGGUUCGGGUUCGGUUCGGUUC

-

16

-

-

-

-

-

-

-

9

-

13

-

oeu_mir_11

scaffold_2:18857579:18857663

+

−34.80

GGUCGGUUCGGUUCGGUUCGGUU

-

10

-

11

-

8

-

5

-

18

-

11

-

oeu_mir_12

scaffold_3:16233511:16233599

−31.52

AGAUGGAGAUGGAGAUGGAGAUG

-

7

-

-

-

-

-

-

-

-

-

-

-

oeu_mir_13

scaffold_4:16304187:16304406

+

−44.80

GCUGGAGUAGCUCAGUUGGUU

-

55

-

167

-

64

-

24

-

83

-

36

-

oeu_mir_14

scaffold_5:13476318:13476427

+

−40.21

-

GAGGGGGAGUGUUGGCGUGAG

-

22

-

-

-

-

-

-

-

-

-

-

oeu_mir_15

scaffold_7:6284292:6284592

−46.40

UGUUGUUGUUGUUGUCGUCGUCA

-

13

-

-

-

-

-

12

-

-

-

-

-

oeu_mir_16

scaffold_11:6066546:6066885

+

−81.90

-

UCCGUUGUAGUCUAGUUGGUU

-

-

-

132

-

-

-

-

-

-

-

-

oeu_mir_17

scaffold_12:2050403:2050549

−60.20

UCUUGCUCAAAUGAGUAUUCCA

-

-

-

12

5

86

36

-

-

12

12

-

-

oeu_mir_18

scaffold_1362:5405:5632

−48.92

-

GUUGUAGACAUGAAAGCGUAAGA

-

-

-

28

-

-

-

-

-

-

-

-

oeu_mir_19

scaffold_14:13968161:13968276

+

−32.40

-

GUUUGGUUCGGUUCGGUUCGGUU

-

-

-

28

-

14

-

18

-

25

-

16

oeu_mir_20

scaffold_19:13198720:13199053

+

−107.50

-

UGGUGGUGGUGGUGGUGGUGACA

-

-

-

12

-

-

-

-

-

-

-

-

oeu_mir_21

scaffold_1:30807164:30807488

-

−87.40

-

AAUAUUUUUGAUCUUUUGGAU

-

-

-

7

-

8

-

-

-

-

-

-

oeu_mir_22

scaffold_5:4584254:4584466

+

−39.20

-

UGUCUGGACCAGUUUACGUGC

-

-

-

12

-

-

-

-

-

11

-

-

oeu_mir_23

scaffold_136:423:565

+

−38.90

-

GUUCGGUUCGGUUCAGUUCGGUU

-

-

-

-

7

10

-

-

-

-

-

-

oeu_mir_24

scaffold_13:1053462:1053647

+

−46.84

GAAGCUAUGAGAUCUGAGGG

-

-

-

-

-

12

-

-

-

-

-

-

-

oeu_mir_25

scaffold_16:12933922:12934079

−56.90

UGGGGAAGACAGGCACAUGAA

-

-

-

-

-

11

-

22

-

11

-

16

-

oeu_mir_26

scaffold_18:1471946:1472262

−66.60

-

GGGGGAGGGGGAGAGAGAGAGAG

-

-

-

-

-

5

-

-

-

-

-

-

oeu_mir_27

scaffold_1:29385469:29385555

−37.30

UGGCGGUGGCGGUGGCGGUGGU

-

-

-

-

-

7

-

6

-

5

-

-

-

oeu_mir_28

scaffold_1:31083890:31083975

−35.80

-

GAUGGUGGGGUUGUGGGUGGC

-

-

-

-

-

26

-

-

-

22

-

-

oeu_mir_29

scaffold_1:34445830:34445942

−27.10

UUGACAGAAGAUGGAGAGCAC

-

-

-

-

-

17

-

54

-

32

-

34

-

oeu_mir_30

scaffold_204:28760:28841

−32.55

GUUCGGUUCGGUUCUGUUCGGUU

-

-

-

-

-

12

-

-

-

-

-

-

-

oeu_mir_31

scaffold_3:15576344:15576447

−51.20

UUCCACGGCUUUCUUGAACUUC

-

-

-

-

-

194

-

212

-

88

 

588

-

oeu_mir_32

scaffold_4:14314575:14314936

−48.55

-

UUUAAAGAGAUUGUUGUAAUU

-

-

-

-

-

22

-

8

-

-

-

-

oeu_mir_33

scaffold_16:2089550:2089717

+

−34.00

AAAUUGGUCCGGACACCCAUA

-

-

-

-

-

-

-

8

-

-

-

6

-

oeu_mir_34

scaffold_4:13969966:13970214

+

−57.51

UGGAGGUGGAGGUGGCGGUGG

-

-

-

-

-

-

-

20

-

-

-

-

-

oeu_mir_35

scaffold_1:42369615:42369709

−23.90

-

GUUCAGUUCGGUUCGGUUCGGUU

-

-

-

-

-

-

-

-

-

13

-

-

oeu_mir_36

scaffold_13:1053462:1053647

+

−46.84

GAAGCUAUGAGAUCUGAGGGC

-

-

-

-

-

-

-

-

-

-

-

10

-

oeu_mir_37

scaffold_16:11530564:11530665

−26.60

AGGGGAGGGAGAGAGAGAGAGAG

-

-

-

-

-

-

-

-

-

-

-

6

5

oeu_mir_38

scaffold_4:14079438:14079535

−39.30

UCUCGGUUCGGUUCGGUUCGGUU

-

-

-

-

-

-

-

-

-

-

-

13

-