Table 1 The list of categories to which Arabidopsis sequences used as the queries were ascribed
Process | Pathway or Protein Complex | No. of Arabidopsis genes | No. of mRNA variants |
|---|---|---|---|
DNA replication | Initiation | 6 | 6 |
Elongation | 11 | 14 | |
Maturation | 5 | 7 | |
ssDNA binding | 9 | 12 | |
Helicase loading factors | 4 | 5 | |
Replicative helicases | 6 | 6 | |
Origin recognition | 8 | 9 | |
PCNA loading complex | 5 | 6 | |
GINS complex | 5 | 7 | |
POLD clamp | 2 | 2 | |
DNA repair | Damage response | 8 | 15 |
Photoreactivation | 6 | 9 | |
Rad6 pathway | 9 | 17 | |
Non-Homologous End Joining | 4 | 6 | |
Mismatch repair | 11 | 11 | |
Base Excision Repair | 17 | 24 | |
BER-related genes | 5 | 9 | |
Nucleotide Excision Repair | 27 | 37 | |
Total | 148 | 202 | |