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Table 2 Responsive and recovering genes absent from the ATH1 micro-array

From: The response and recovery of the Arabidopsis thalianatranscriptome to phosphate starvation

Identifiers

Root

Shoot

AGI

Symbol

Res.*

Rec.*

Class

Res.*

Rec.*

Class

  

 Systemically Regulated

    

AT4G01060

CPL3/ETC3

4.291

−3.748

IPR

1.476

−1.505

IPR

AT5G43300

GDPD3

4.272

−4.045

IPR

2.121

−1.893

IPR

AT3G09922

IPS1

5.971

−4.591

IPR

6.572

−5.800

IPR

AT4G19038

LCR15

1.376

−2.223

LNR

1.143

−1.756

LNR

AT3G61172

LCR8

0.412

−1.981

LNR

0.518

−1.667

LNR

AT2G41240

BHLH100

−2.631

1.024

PNR

−3.980

1.716

INR

AT3G07005

LCR43

−1.692

0.274

PNR

1.687

−0.321

PPR

AT1G73607

LCR65

−2.178

−0.235

PNR

1.417

−1.490

IPR

AT3G56970

ORG2

−1.625

0.454

PNR

−4.283

1.894

INR

AT3G61177

LCR53

1.963

−1.140

PPR

−1.302

0.300

PNR

   

 Root Specific

   

AT1G73165

CLE1

−1.977

1.924

INR

−0.107

−0.097

BAR

AT2G31081

CLE4

−2.012

2.875

INR

1.168

−0.746

BAR

AT2G31082

CLE7

−1.952

2.312

INR

0.111

0.121

BAR

AT5G24920

GDU5

−2.877

3.590

INR

0.217

0.223

BAR

AT3G06985

LCR44

−1.885

2.264

INR

1.002

−0.650

BAR

AT3G49570

LSU3

−2.308

1.684

INR

0.613

0.096

BAR

AT4G18197

PUP7

−1.770

1.755

INR

0.544

−0.300

BAR

AT1G54760

AGL85

1.941

−2.146

IPR

−0.136

−0.280

BAR

AT5G06905

CYP712A2

2.089

−2.979

IPR

−0.110

−0.599

BAR

AT3G30725

GDU6

3.627

−5.125

IPR

−0.030

−0.020

BAR

AT2G32960

PFA-DSP2

1.810

−1.706

IPR

1.185

−1.223

BAR

AT3G09400

PLL3

2.523

−2.929

IPR

0.978

−0.054

BAR

AT4G27920

RCAR4

2.259

−2.132

IPR

0.734

−0.431

BAR

AT1G53130

GRI

−0.375

−1.756

LNR

−0.056

−0.117

BAR

AT3G61182

LCR54

0.226

−1.759

LNR

−0.763

−0.202

BAR

AT2G14365

LCR84

0.519

−1.936

LNR

0.756

−0.101

BAR

AT4G10115

SCRL20

0.348

−2.985

LNR

−0.297

−0.485

BAR

AT4G29305

LCR25

−1.368

2.295

LPR

0.973

−0.521

BAR

AT4G06746

RAP2.9

−1.617

3.125

LPR

−0.404

0.512

BAR

AT4G23170

EP1

−2.487

0.662

PNR

−0.033

−0.134

BAR

AT4G09795

LCR13

−2.395

1.119

PNR

−0.939

0.103

BAR

AT3G23167

LCR39

−1.694

0.502

PNR

0.556

−1.297

BAR

AT4G18195

PUP8

−1.820

1.335

PNR

−0.136

−0.001

BAR

AT3G23715

SCRL13

−2.088

0.971

PNR

1.289

0.501

BAR

AT2G20825

ULT2

−1.640

0.337

PNR

0.339

0.139

BAR

AT5G45105

ZIP8

−2.392

0.846

PNR

0.284

−1.101

BAR

AT4G22210

LCR85

1.664

0.028

PPR

0.399

−0.238

BAR

AT1G60815

RALFL7

1.728

−0.550

PPR

0.315

0.319

BAR

   

 Shoot Specific

   

AT1G47510

AT5PTASE11

0.182

−0.184

BAR

−1.362

1.610

INR

AT1G66145

CLE18

−0.570

−0.135

BAR

−1.422

1.680

INR

AT4G11485

LCR11

−0.969

−1.131

BAR

−1.695

1.849

INR

AT4G13890

SHM5

−0.177

−0.165

BAR

−1.534

1.421

INR

AT4G10767

SCRL21

−0.211

−0.470

BAR

1.459

−2.258

IPR

AT2G30432

TCL1

0.062

−0.924

BAR

1.680

−1.893

IPR

AT1G06280

LBD2

−0.667

−0.194

BAR

0.729

−1.385

LNR

AT4G29280

LCR22

−0.461

−0.171

BAR

0.485

−1.779

LNR

AT3G04430

NAC049

1.550

−0.809

BAR

0.731

−1.440

LNR

AT1G23147

RALFL3

−0.093

−0.201

BAR

1.262

−2.229

LNR

AT5G45875

SCRL27

0.864

0.235

BAR

0.754

−1.712

LNR

AT4G31380

FLP1

0.549

−0.073

BAR

−0.234

1.555

LPR

AT4G29283

LCR21

−1.583

−0.275

BAR

0.150

1.783

LPR

AT2G14935

LCR40

0.461

0.290

BAR

−0.469

1.423

LPR

AT2G12465

LCR50

0.500

−1.178

BAR

−0.942

1.510

LPR

AT2G02147

LCR73

0.599

1.466

BAR

−0.563

1.383

LPR

AT2G04425

LCR82

1.334

0.118

BAR

−1.264

1.380

LPR

AT4G36950

MAPKKK21

0.228

−0.210

BAR

−0.776

1.478

LPR

AT5G44430

PDF1.2 C

0.682

−1.123

BAR

−0.528

1.747

LPR

AT2G05117

SCRL9

−0.182

0.668

BAR

−1.005

1.595

LPR

AT5G37415

AGL105

0.684

−0.214

BAR

−1.931

0.608

PNR

AT2G45110

EXPB4

−0.018

0.286

BAR

−1.495

0.106

PNR

AT1G07900

LBD1

−0.174

−0.103

BAR

−1.834

0.837

PNR

AT3G43083

LCR33

−0.830

0.966

BAR

−1.956

0.748

PNR

AT4G39917

LCR45

−0.321

0.020

BAR

−1.897

0.452

PNR

AT5G14490

NAC085

0.099

−0.557

BAR

−1.365

0.724

PNR

AT4G11653

RALFL29

−0.280

−0.607

BAR

−1.900

0.762

PNR

AT1G60625

RALFL6

−0.668

0.726

BAR

−1.671

0.373

PNR

AT4G24230

ACBP3

1.295

−0.391

BAR

1.546

−1.194

PPR

AT4G29273

LCR23

0.128

−0.851

BAR

1.352

−0.802

PPR

AT2G19020

RALFL10

−1.217

0.276

BAR

1.745

−1.112

PPR

AT2G34825

RALFL20

0.240

0.456

BAR

1.375

−0.603

PPR

AT5G08150

SOB5

1.213

−1.337

BAR

1.944

−1.205

PPR

  1. This table presents 71 of the 477 tiling-array-specific genes identified as differentially expressed during the Pistarv response and/or recovery. These 71 were chosen only for the reason that they have been annotated with a gene symbol. The remaining 406 genes do not have gene symbols and are poorly annotated. See Additional file 5 for a complete list. *: Abbreviations for response (Res.) and recovery (Rec.).