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Table 2 Illumina read mapping and corrections

From: De novo assembly of the carrot mitochondrial genome using next generation sequencing of whole genomic DNA provides first evidence of DNA transfer into an angiosperm plastid genome

Sequence

Number of homopolymers

Cumulative homopolymers length (nt)

Number of errorsa

Cumulative errors length (nt)

Percent of errorb

Non- coding

1570

8785

34

80

0.91

Coding

23

122

6

22

18.0

Total

1593

8907

40

102

1.14

  1. Error rate estimation is for homopolymer sequences in coding and non-coding regions.
  2. a Corresponding to the number of corrected homopolymer sequences after mapping Illumina reads.
  3. b Calculated as cumulative ambiguity length/cumulative error length.