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Table 3 Single nucleotide polymorphism (SNP) marker loci significantly associated with flowering time (FT), northern corn leaf blight (NCLB), and FT corrected NCLB (NCLB FT ) resistance in the different heterotic pools as identified by single marker analysis. p G is the proportion of the explained genotypic variance and SSS is the Stiff Stalk heterotic pool

From: Genome-wide association mapping of flowering time and northern corn leaf blight (Setosphaeria turcica) resistance in a vast commercial maize germplasm set

   Marker   Chr. Position Position   Allele Effect p G
Trait Pool locus Gene bin (cM) (bp) P value 1/2 Allele 1-2 (%)
FT Flint M_00049486 LE00214 8.05 197.92 145084250 4.3e-06** C/T -2.73 1.52
   M_00047185 LE00173 9.02 75.54 18327094 5.2e-06** A/T -3.61 0.00
   Simultaneous fit         1.87
  Lancaster M_00045062 MAGI39472 3.07 346.79 195315842 1.5e-05* C/T 2.83 7.48
   M_00045063 MAGI39472 3.07 346.79 195315842 1.5e-05* T/G 2.83 7.48
   M_00048149 LE00126 8.05 187.40 128429853 5.8e-06** G/A 3.15 10.20
   M_00049487 LE00214 8.05 197.92 145084209 1.9e-06** C/A -4.20 13.64
   Simultaneous fit        22.99  
  SSS M_00048750 LE00097 2.02 95.07 5820265 2.4e-06** G/A 13.62 14.80
   M_00047756 LE00008 5.03 186.65 67510540 5.6e-06** C/T -6.25 16.76
   Simultaneous fit         21.35
  Iodent M_00039634 AY106491 8.03 115.95 65244298 1.7e-05* G/A 3.57 18.18
   M_00044984 CL4016 8.05 191.34 131678990 1.1e-05* T/C 1.95 14.82
   M_00044985 CL4016 8.05 191.34 131678953 1.2e-05* A/G 1.98 15.18
   M_00040388 AY106357 8.05 192.10 134066305 1.2e-06** T/C 2.51 17.14
   M_00042146 AY109558 8.05 192.10 135061056 1.3e-05* T/C 2.30 18.77
   M_00046254 HDT102 8.05 192.26 136131540 1.4e-05* T/A -2.16 17.55
   Simultaneous fit         25.50
NCLB SSS M_00046267 HAM101 2.08 322.28 212539314 1.2e-06** C/T 1.09 9.38
   M_00046268 HAM101 2.08 322.28 212539211 7.3e-07** T/C 1.10 11.30
   Simultaneous fit         9.38
  Iodent M_00048759 LE00099 3.05 227.44 160670670 1.4e-05* A/G 1.78 6.05
   M_00044733 AZM452718 5.03 187.81 69119810 5e-06** G/A -0.90 8.49
   M_00046712 AY103770 9.03 111.71 99416354 6e-06** G/C 1.25 10.33
   M_00046713 AY103770 9.03 111.71 99416416 9.7e-07** T/G -1.32 11.49
   M_00040630 AY105678 9.05 151.55 130918789 9.1e-06* C/T -0.81 10.02
   M_00040631 AY105678 9.05 151.55 130918887 1.1e-05* T/C -0.79 9.08
   Simultaneous fit         28.94
NCLB FT SSS M_00046331 HAM101 2.08 322.10 212537417 5.9e-06** A/T -1.01 0.00
   Simultaneous fit         0.00
  Iodent M_00040577 AY105760 9.03 99.89 50762538 1.3e-05* T/G 0.90 12.87
   M_00040630 AY105678 9.05 151.55 130918789 5e-07** C/T -0.97 18.89
   M_00040631 AY105678 9.05 151.55 130918887 5.3e-07** T/C -0.96 15.99
   Simultaneous fit         23.20
  1. *Significant at P <0.05 with amplicon-wise Bonferroni correction.
  2. **Significant at P <0.05 with Bonferroni correction.
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BMC Plant Biology

ISSN: 1471-2229

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