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Table 5 The family of Deg/HtrA proteases in Chlamydomonas reinhardtii

From: The family of Deg/HtrA proteases in plants

Gene modela Protein nameb UniProtKB acc. no.c aa Domain arrangementd Orthologs in other plants (this study) Proposed protein name
Cre02.g088400 Deg1 Deg1A A8I8X2 530 PD-PDZ At3g27925 Os05g0568900 Pp1s160_80V2.1 Pp1s198_95V2.1 POPTR_0001s34960 CrDeg1.1
Cre14.g630550 Deg13 - - 555 PD-PDZ At3g27925 Os05g0568900 Pp1s160_80V2.1 Pp1s198_95V2.1 POPTR_0001s34960 CrDeg1.2
Cre12.g498500 Deg11 - - 462 PD-PDZ At3g27925 Os05g0568900 Pp1s160_80V2.1 Pp1s198_95V2.1 POPTR_0001s34960 CrDeg1.3
Cre02.g092000 Deg2 Deg2 A8I9B8 656 PD-PDZ-PDZ Deg2 Group CrDeg2
Cre02.g110600 Deg5 Deg5 A8I3D5 356 PD At4g18370 Os12g0616600 Pp1s63_93V2.1 POPTR_0011s02330 CrDeg5
Cre03.g180650 Deg7 Deg7 A8JH35 1108 PD-PDZ-PDZ- PDia-PDZ-PDZ At3g03380 Os02g0712000 Pp1s237_5V2.1 Pp1s21_312V2.1 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720 CrDeg7
Cre01.g028350 Deg8 Deg8 A8HQB3 436 PD-PDZ At5g39830 Os04g0459900 Pp1s31_48V2.1 POPTR_0004s13440 CrDeg8
Cre19.g752200e - - A8JBP6 1353 PD-betaglycan- hydrolase At5g40200 Os02g0742500 Os06g0234100 Pp1s176_79V2.1 Pp1s1_200V2.1 POPTR_0015s08440 POPTR_0004s13440 At2g47940 Os05g0147500 Pp1s8_145V2.1 POPTR_0014s12970 POPTR_0020s00220 CrDeg9.1
Cre14.g617600 Deg9 Deg9 A8HNV3 619 PD-PDZ-PDZ At5g36950 Os05g0417100 Pp1s55_7V5.1 POPTR_0008s07940 CrDeg9.2
Cre01.g013300 Deg10 - - 739 PD-PDZ-PDZ At5g36950 Os05g0417100 Pp1s55_7V5.1 POPTR_0008s07940 CrDeg10
Cre12.g548200 - - A8IYE3 (fragment) 1249 NT-PD At1g28320 Os05g0497700 Pp1s196_28V2.1 POPTR_0004s04650 POPTR_0011s05510 CrDeg15
Cre07.g332050 - - A8IGX3 (fragment) 284 PD n.a. – not a Deg?  
Cre13.g579900 - - - 415 PDia-PDZ-PDZ n.a.  
Cre03.g203730 - CrDegO A8IXF5 789 PDia-PDZ n.a.  
Cre38.g785300 - A8JG98 319 PDia n.a.  
  1. a According to the Phytozome v7.0 database (http://www.phytozome.net/). b First name according the Phytozome v7.0 database, second name according to UniprotKB (http://www.uniprot.org/). c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potantially active protease domain; PD(1/2), truncated protease domain, probably proteolytically inactive; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated, or protease domain is incomplete); PDZ, PDZ domain. e Model is probably not correct, not supported by EST, repetetive stretches of single amino acids.