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Table 4 The family of Deg/HtrA proteases in Physcomitrella patens

From: The family of Deg/HtrA proteases in plants

Gene modela UniProtKB acc. no.b aa Domain arrangementc Orthologues in other plants (this study) Proposed protein name
Pp1s160_79V6 A9T3R3 500 PD-PDZ At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960 PpDeg1.1
Pp1s198_100V6 A9TBD2 475 PD-PDZ At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960 PpDeg1.2
Pp1s79_92V6 A9SHE2 501 PD-PDZ At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960 PpDeg1.3
Pp1s21_138V6 A9RQ01 486 PD-PDZ At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 POPTR_0001s34960 PpDeg1.4
Pp1s8_140V6 A9RGN6 618 PD-PDZ-PDZ At2g47940 Cre19.g752200 Os05g0147500 POPTR_0014s12970 POPTR_0020s00220 PpDeg2
Pp1s63_95V6 A9SBN1 362 PD At4g18370 Cre02.g110600 Os12g0616600 POPTR_0011s02330 PpDeg5
Pp1s237_5V6 A9TIB2 1076 PD-PDZ-PDZ- PDia-PDZ-PDZ At3g03380 Cre03.g180650 Os02g0712000 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720 PpDeg7.1
Pp1s21_327V6 A9RQ61 1072 PD-PDZ-PDZ- PDia-PDZ-PDZ At3g03380 Cre03.g180650 Os02g0712000 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720 PpDeg7.2
Pp1s31_50V6 A9RVV4 493 PD-PDZ At5g39830 Cre01.g028350 Os04g0459900 POPTR_0004s13440 PpDeg8
Pp1s176_87V6 A9T734 612 PD-PDZ-PDZ At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 POPTR_0015s08440 POPTR_0004s13440 PpDeg9.1
Pp1s1_203V6 A9RB23 540 PD-PDZ At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 POPTR_0015s08440 POPTR_0004s13440 PpDeg9.2
Pp1s55_7V5   651 PD-PDZ-PDZ At5g36950 Cre01.g013300 Cre14.g617600 Os05g0417100 POPTR_0008s07940 PpDeg10
Pp1s180_15V6 A9T7W1 473 PD-PDZ At5g27660 Os11g0246600 POPTR_0013s01900 PpDeg14
Pp1s196_28V6 A9TAV2 784 NT-PD At1g28320 Cre12.g548200 Os05g0497700 POPTR_0004s04650 POPTR_0011s05510 PpDeg15
Pp1s152_166V5.1   339d PD-PDZ Group 1a PpDeg1- group-like
Pp1s176_111V6   527 PDia-PDZ n.a.  
Pp1s67_44V6 A9SD45 408 PDia-PDZ n.a.  
  1. a Model identifier according to Phytozome v7.0 (http://www.phytozome.net). Discrepancies between the suggested gene model and the UniprotKB entry were solved by analyzing EST data (if present) and analysis of the genomic sequence for the presence of ORFs yielding aa sequences similar to ortholog and paralog proteins, with respect to potential splicing sites. b If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). c According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PD(1/2), truncated protease domain, probably proteolytically inactive; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated, or protease domain is incomplete); PDZ, PDZ domain. d Fragment extended based on the EST data (asmbl_4603.p5physco4 from Phytozome 5.0., TC42496 in DCFI http://compbio.dfci.harvard.edu/cgi-bin/tgi/tc_report.pl?tc=TC42496&species=moss).