Skip to main content

Table 2 The family of Deg/HtrA proteases in Populus trichocarpa

From: The family of Deg/HtrA proteases in plants

Gene modela Protein nameb UniProtKB acc. no.c aa domain arrangementd Orthologs in other plants (this study) Proposed protein name
POPTR_0001s34960 Pt706718 PtDeg1 A9PI52 429 PD-PDZ At3g27925 Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 Pp1s160_79V6 Pp1s198_100V6 PtDeg1
POPTR_0014s12970 Pt572750 PtDeg2.1 B9I9X1 592 PD-PDZ-PDZ At2g47940 Cre19.g752200 Os05g0147500 Pp1s8_140V6 PtDeg2.1
POPTR_0020s00220 Pt775566 PtDeg2.2 B9IBU0 624 PD-PDZ-PDZ At2g47940 Cre19.g752200 Os05g0147500 Pp1s8_140V6 PtDeg2.2
POPTR_0011s02330 Pt771291 PtDeg5.1 B9HYW4 316 PD At4g18370 Cre02.g110600 Os12g0616600 Pp1s63_95V6 PtDeg5
POPTR_0017s03050 Pt816849 PtDeg7.1 B9GV35 1128 PD-PDZ-PDZ- PDia-PDZ-PDZ At3g03380 Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6 PtDeg7.1
POPTR_0004s08740 Pt555951 PtDeg7.2 B9H390 1080 PD-PDZ-PDZ- PDia-PDZ-PDZ At3g03380 Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6 PtDeg7.2
POPTR_0004s08720 Pt714140 PtDeg7.3 B9H391 1117 PD-PDZ-PDZ- PDia-PDZ-PDZ At3g03380 Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6 PtDeg7.3
POPTR_0004s13440 Pt199267 PtDeg8 B9H3X7 465 PD-PDZ At5g39830 Cre01.g028350 Os04g0459900 Pp1s31_50V6 PtDeg8
POPTR_0015s08440 Pt251989 PtDeg9.1 B9IEN8 556 PD-PDZ-PDZ At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 Pp1s176_87V6 Pp1s1_203V6 PtDeg9.1
POPTR_0012s07930 Pt728836/Pt823359 PtDeg9.2 B9I375 559 PD-PDZ-PDZ At5g40200 Cre19.g752200 Os02g0742500 Os06g0234100 Pp1s176_87V6 Pp1s1_203V6 PtDeg9.2
POPTR_0008s07940   B9HI10 587 PD-PDZ-PDZ At5g36950 Cre01.g013300 Cre14.g617600 Os05g0417100 Pp1s55_7V5.1 PtDeg10
POPTR_0013s01900 Pt662713/Pt662714 PtDeg14.1 PtDeg14.2 B9I7J6 (partial) 422 PD-PDZ At5g27660 Os11g0246600 Pp1s180_15V6 PtDeg14
POPTR_0004s04650 Pt555773 PtDeg15.1 B9H2S3 752 NT-PD At1g28320 Cre12.g548200 Os05g0497700 Pp1s196_28V6 PtDeg15.1
POPTR_0011s05510 Pt266544 PtDeg15.2 B9N3H9 729 NT-PD At1g28320 Cre12.g548200 Os05g0497700 Pp1s196_28V6 PtDeg15.2
POPTR_0018s04140 Pt787034 PtDeg17.1 B9NA38 356 PDia-PDZ n.a. PtDeg17.1
POPTR_0394s00220 Pt586371 PtDeg17.2 B9NA39 (fragment) 298 PDia-PDZ n.a. PtDeg17.2
POPTR_0018s04150 Pt577788 PtDeg17.3 B9INA2 364 PDia-PDZ n.a. PtDeg17.3
  1. a First model identifier is from Phytozome v7.0 (http://www.phytozome.net), the second identifier is the corresponding identifier according to [16]. Discrepancies between the suggested gene model and the UniprotKB entry were solved by analyzing the EST data (if present) and analysis of the genomic sequence for the presence of ORFs yielding aa sequences similar to ortholog or paralog proteins, with respect to potential splicing sites.b According to [16]c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PD(1/2), truncated protease domain, probably proteolytically inactive; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated, or protease domain is incomplete); PDZ, PDZ domain.