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Table 1 The family of Deg/HtrA proteases in Arabidopsis thaliana

From: The family of Deg/HtrA proteases in plants

Gene modela

Protein nameb

UniProtKB acc. no.c

aa

domain arrangementd

Orthologs in other plants (this study)

Protein name used in this study

At3g27925

DEG 1

O22609

439

PD-PDZ

Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 Pp1s160_79V6 Pp1s198_100V6 POPTR_0001s34960

AtDeg1

At2g47940

DEG 2

O82261

607

PD-PDZ-PDZ

Cre19.g752200 Os05g0147500 Pp1s8_140V6 POPTR_0014s12970 POPTR_0020s00220

AtDeg2

At1g65630

DEG 3

Q9SHZ1

559

PD-PDZ-PDZ

Deg 10 Subgroup

AtDeg3

At1g65640

DEG 4

Q9SHZ0

518

PD-PDZ-PDZ

Deg10 Subgroup

AtDeg4

At4g18370

DEG 5

Q9SEL7

323

PD

Cre02.g110600 Os12g0616600 Pp1s63_95V6 POPTR_0011s02330

AtDeg5

At1g51150

DEG 6

Q9C691

219

PDia

n.a.

AtDeg6

At3g03380

DEG 7

Q8RY22

1097

PD-PDZ-PDZ- PDia-PDZ-PDZ

Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720

AtDeg7

At5g39830

DEG 8

Q9LU10

448

PD-PDZ

Cre01.g028350 Os04g0459900 Pp1s31_50V6 POPTR_0004s13440

AtDeg8

At5g40200

DEG9

Q9FL12

592

PD-PDZ-PDZ

Cre19.g752200 Os02g0742500 Os06g0234100 Pp1s176_87V6 Pp1s1_203V6 POPTR_0015s08440 POPTR_0004s13440

AtDeg9

At5g36950

DEG10

Q9FIV6

586

PD-PDZ-PDZ

Cre14.g617600 Cre01.g013300 Os05g0417100 Pp1s55_7V5.1 POPTR_0008s07940

AtDeg10

At3g16540

DEG11

Q9LK71

555

PD-PDZ-PDZ

Deg10 Subgroup

AtDeg11

At3g16550

DEG12

Q9LK70

499

PD-PDZ-PDZ

Deg10 Subgroup

AtDeg12

At5g40560

DEG13

Q9FM41

486

PD-PDZ-PDZ

Deg10 Subgroup

AtDeg13

At5g27660

DEG14

Q3E6S8

429

PD-PDZ

Os11g0246600 Pp1s180_15V6 POPTR_0013s01900

AtDeg14

At1g28320

DEG15

Q8VZD4

709

NT-PD

Cre12.g548200 Os05g0497700 Pp1s196_28V6 POPTR_0004s04650 POPTR_0011s05510

AtDeg15

At5g54745

DEG16

Q3E8B4

198

PDia

n.a.

AtDeg16

  1. a According to TAIR database. b According to [14]. c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated or missing); PDZ, PDZ domain.