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Table 1 The family of Deg/HtrA proteases in Arabidopsis thaliana

From: The family of Deg/HtrA proteases in plants

Gene modela Protein nameb UniProtKB acc. no.c aa domain arrangementd Orthologs in other plants (this study) Protein name used in this study
At3g27925 DEG 1 O22609 439 PD-PDZ Cre02.g088400 Cre14.g630550 Cre12.g498500 Os05g0568900 Pp1s160_79V6 Pp1s198_100V6 POPTR_0001s34960 AtDeg1
At2g47940 DEG 2 O82261 607 PD-PDZ-PDZ Cre19.g752200 Os05g0147500 Pp1s8_140V6 POPTR_0014s12970 POPTR_0020s00220 AtDeg2
At1g65630 DEG 3 Q9SHZ1 559 PD-PDZ-PDZ Deg 10 Subgroup AtDeg3
At1g65640 DEG 4 Q9SHZ0 518 PD-PDZ-PDZ Deg10 Subgroup AtDeg4
At4g18370 DEG 5 Q9SEL7 323 PD Cre02.g110600 Os12g0616600 Pp1s63_95V6 POPTR_0011s02330 AtDeg5
At1g51150 DEG 6 Q9C691 219 PDia n.a. AtDeg6
At3g03380 DEG 7 Q8RY22 1097 PD-PDZ-PDZ- PDia-PDZ-PDZ Cre03.g180650 Os02g0712000 Pp1s237_5V6 Pp1s21_327V6 POPTR_0017s03050 POPTR_0004s08740 POPTR_0004s08720 AtDeg7
At5g39830 DEG 8 Q9LU10 448 PD-PDZ Cre01.g028350 Os04g0459900 Pp1s31_50V6 POPTR_0004s13440 AtDeg8
At5g40200 DEG9 Q9FL12 592 PD-PDZ-PDZ Cre19.g752200 Os02g0742500 Os06g0234100 Pp1s176_87V6 Pp1s1_203V6 POPTR_0015s08440 POPTR_0004s13440 AtDeg9
At5g36950 DEG10 Q9FIV6 586 PD-PDZ-PDZ Cre14.g617600 Cre01.g013300 Os05g0417100 Pp1s55_7V5.1 POPTR_0008s07940 AtDeg10
At3g16540 DEG11 Q9LK71 555 PD-PDZ-PDZ Deg10 Subgroup AtDeg11
At3g16550 DEG12 Q9LK70 499 PD-PDZ-PDZ Deg10 Subgroup AtDeg12
At5g40560 DEG13 Q9FM41 486 PD-PDZ-PDZ Deg10 Subgroup AtDeg13
At5g27660 DEG14 Q3E6S8 429 PD-PDZ Os11g0246600 Pp1s180_15V6 POPTR_0013s01900 AtDeg14
At1g28320 DEG15 Q8VZD4 709 NT-PD Cre12.g548200 Os05g0497700 Pp1s196_28V6 POPTR_0004s04650 POPTR_0011s05510 AtDeg15
At5g54745 DEG16 Q3E8B4 198 PDia n.a. AtDeg16
  1. a According to TAIR database. b According to [14]. c If more than one protein entry was present, the different versions were analyzed by the HHPred platform (http://toolkit.tuebingen.mpg.de/hhpred/), and the one with intact protease domain and (if present) PDZ domain(s) was considered here. Sequences used in this study are supplied as Supplementary material (Additional file 1). d According to the HHPred platform. Abbreviations: aa, amino acids; n.a., not available; NT, elongated N-terminus; PD, potentially active protease domain; PDia, inactive protease domain (i.e. at least one residue of the catalytic triad is mutated or missing); PDZ, PDZ domain.