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Table 6 Selected quantitative trait loci (QTL) regions associated with bud set in Populus nigra.

From: Phenotypic plasticity, QTL mapping and genomic characterization of bud set in black poplar

Parent - LG Traits Flanking SSRs Overlap QTL interval length Position on P. trichocarpav2 (kbp) Genes and SNPs within QTL interval 722 CGs from Ruttink et al[31] CGs from other sources
    cM Kbp Start End Genes Poli SNPs intrasp. SNPs* all LG within QTL all LG within QTL
Poli - Ia date2.5 PMGC_2550-PMGC_2499 22.12 1663.095 4828.200 6491.295 217 2967 14482 81 2 4 0
  date1.5             
  subproc2             
Poli - IV date2.5 PTR01-ORPM_221 64.2 7780.103 8083.898 15864.000 470 29159 88907 39 6 4 2
  date1.5             
  date1.5             
Poli - XIII date2.5 PMGC_2658-WPMS_1 20.1 5524.000 6787.986 12312.018 322 17536 57215 42 5 1 0
Poli - XVII date2.5 PMGC_2889-PMGC_325 52.8 6159.403 8295.993 14455.396 445 23391 99316 21 7 2 1
  date1.5             
58-861 - X date2.5 PMGC_2163-PMGC_510 25 2839.533 3827.925 6667.458 125 11418 33742 46 2 4 0
  date1.5             
58-861 - XIII subproc1 WPMS_02-GCPM_2180 120.9 10565.891 0.001 10565.891 954 30973 100689 42 29 1 1
58-861 - XVI date2.5 WPMS_02-GCPM_2180 34.89 8956.860 0.001 8956.861 990 27957 94980 31 20 2 2
  date1.5             
  1. QTL intervals were projected on the physical genome sequence by anchored markers (flanking SSRs). The length of the QTL intervals in centiMorgan (cM) and in Kilobase pairs (Kbp) is given together with the number of gene models, single nucleotide polymorphisms (SNPs) for the male parent 'Poli' and SNPs between 'Poli' and three other P. nigra genotypes (71077-308, BEN3, and BDG) [30]. The table also reports the number of candidate genes (CGs) for bud development from Ruttink et al. [31] and other sources (literature and GenBank) on linkage groups (LG) containing QTL and within the QTL interval.
  2. * SNPs among four P. nigra genotypes (Poli, 71077-308, BEN3, and BDG).