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Table 4 List of some defense related GDTA in canker versus healthy stem tissues in Chinese chestnut.

From: Chestnut resistance to the blight disease: insights from transcriptome analysis

Contig Name

Ath. BH1

# CCC Reads2

# CCHS Reads3

log2 norm4

Function

CCall_contig18_v2

AT1G02500

68

31

2.33

S-adenosylmethionine synthetase

CCall_contig24687_v2

AT1G02800

29

1

6.05

endo-1,4-beta glucanase (CEL2)

CCall_contig45501_v2

AT1G04410

111

155

0.71

malate dehydrogenase

CCall_contig26701_v2

AT1G05010

260

12

5.63

1-aminocyclopropane-1- carboxylate oxidase

CCall_contig35157_v2

AT1G06180

8

0

5.20

MYB3R- and R2R3- type MYB- encoding genes

CCall_contig28632_v2

AT1G13280

33

9

3.07

allene oxide cyclase

CCall_contig39585_v2

AT1G13440

294

211

1.67

Glyceraldehyde-3-phosphate dehydrogenase C2

CCall_contig27982_v2

AT1G15520

26

8

2.90

ABC transporter family

CCall_contig42826_v2

AT1G15950

66

56

1.43

cinnamoyl CoA reductase

CCall_contig13029_v2

AT1G19180

45

30

1.78

JAZ1 is a nuclear-localized protein

CCall_contig9319_v2

AT1G22450

35

37

1.12

subunit 6b of cytochrome c oxidase

CCall_contig48116_v2

AT1G24020

9

0

5.37

MLP-LIKE PROTEIN 423 (MLP423)

CCall_contig22194_v2

AT1G47128

94

87

1.31

cysteine proteinase precursor- like protein

CCall_contig8876_v2

AT1G51470

8

0

5.20

myrosinase.

CCall_contig35286_v2

AT1G52340

23

7

2.91

cytosolic short-chain dehydrogenase/reductase

CCall_contig38717_v2

AT1G55020

19

0

6.44

lipoxygenase

CCall_contig12135_v2

AT1G58440

15

5

2.78

squalene monooxygenase activity.

CCall_contig30860_v2

AT1G59960

133

155

0.97

aldo/keto reductase

CCall_contig42753_v2

AT1G64520

26

20

1.57

Regulatory Particle non-ATPase 12a (RPN12a)

CCall_contig1090_v2

AT1G65930

80

109

0.75

NADP +- isocitrate dehydrogenase

CCall_contig24182_v2

AT2G06050

25

16

1.84

12-oxophytodienoate reductase

CCall_contig41807_v2

AT2G16500

84

50

1.94

arginine decarboxylase (ADC)

CCall_contig12372_v2

AT2G18950

19

13

1.74

homogentisate phytyltransferase

CCall_contig11468_v2

AT2G22240

171

74

2.40

Myo-inositol-1-phosphate synthase isoform 2

CCall_contig19221_v2

AT2G26710

8

0

5.20

cytochrome p450 family

CCall_contig3763_v2

AT2G30080

10

3

2.93

member of Fe(II) transporter isolog family

CCall_contig43865_v2

AT2G30490

28

16

2.00

cinnamate-4-hydroxylase

CCall_contig3045_v2

AT2G33150

56

71

0.85

organellar 3-ketoacyl-CoA thiolase

CCall_contig28249_v2

AT2G37170

140

194

0.73

plasma membrane intrinsic protein (PIP2)

CCall_contig45019_v2

AT2G38710

14

8

2.00

AMMECR1 family

CCall_contig22956_v2

AT2G38870

39

0

7.48

PR (pathogenesis-related) peptide

CCall_contig28937_v2

AT2G47510

10

2

3.52

FUM1: fumarase

CCall_contig3196_v2

AT3G01280

47

56

0.94

voltage-dependent anion channel

CCall_contig46205_v2

AT3G01420

7

0

5.00

alpha-dioxygenase

CCall_contig28792_v2

AT3G04120

12

1

4.78

cytosolic GADPH (C subunit)

CCall_contig8907_v2

AT3G04720

17

4

3.28

similar to the antifungal chitin- binding

CCall_contig41513_v2

AT3G10920

42

26

1.89

manganese superoxide dismutase (MSD1)

CCall_contig3523_v2

AT3G10985

36

34

1.28

A senescence-associated gene

CCall_contig27333_v2

AT3G12360

39

34

1.39

protein with an ankyrin motif

CCall_contig39986_v2

AT3G12490

39

33

1.44

cysteine proteinase inhibitor activity

CCall_contig42078_v2

AT3G12500

73

13

3.69

basic chitinase

CCall_contig46415_v2

AT3G23600

72

6

4.78

dienelactone hydrolase family protein

CCall_contig11692_v2

AT3G45140

103

63

1.90

Chloroplast lipoxygenase

CCall_contig8863_v2

AT4G01070

8

1

4.20

glycosyltransferase (UGT72B1)

CCall_contig11269_v2

AT4G15480

217

99

2.33

sinapic acid:UDP-glucose glucosyltransferase

CCall_contig38534_v2

AT4G34135

11

2

3.66

flavonol 7-O-glucosyltransferase (EC 2.4.1.237)

CCall_contig18339_v2

AT4G37530

7

1

4.00

peroxidase, putative

CCall_contig4088_v2

AT4G37980

150

15

4.52

ELICITOR-ACTIVATED GENE 3-1 (ELI3-1)

CCall_contig24556_v2

AT4G37990

29

0

7.05

aromatic alcohol:NADP + oxidoreductase

CCall_contig16847_v2

AT4G39980

8

0

5.20

2-deoxy-D-arabino-heptulosonate 7-phosphate synthase

CCall_contig14020_v2

AT5G06950

17

11

1.82

Transcription factor of the B-ZIP family

CCall_contig45136_v2

AT5G14740

147

19

4.15

beta carbonic anhydrase

CCall_contig41707_v2

AT5G42650

184

0

9.72

cytochrome p450 CYP74 gene family

CCall_contig46027_v2

AT5G45340

16

0

6.20

protein with ABA 8'-hydroxylase activity

CCall_contig9507_v2

AT5G52640

22

15

1.75

cytosolic heat shock protein AtHSP90.1

CCall_contig42347_v2

AT5G64250

13

4

2.90

2-nitropropane dioxygenase family /NPD family

  1. 1, Ath. BH: Arabidopsis best hit; 2, # CCC Reads: number of reads in Chinese chestnut canker libraries; 3, # CCHS Reads: number of reads in Chinese chestnut healthy stem libraries; 4, log2 norm, Expression ratio normalized