From: Chestnut resistance to the blight disease: insights from transcriptome analysis
Contig Name | Ath. BH1 | # CCC Reads2 | # CCHS Reads3 | log2 norm4 | Function |
---|---|---|---|---|---|
CCall_contig18_v2 | AT1G02500 | 68 | 31 | 2.33 | S-adenosylmethionine synthetase |
CCall_contig24687_v2 | AT1G02800 | 29 | 1 | 6.05 | endo-1,4-beta glucanase (CEL2) |
CCall_contig45501_v2 | AT1G04410 | 111 | 155 | 0.71 | malate dehydrogenase |
CCall_contig26701_v2 | AT1G05010 | 260 | 12 | 5.63 | 1-aminocyclopropane-1- carboxylate oxidase |
CCall_contig35157_v2 | AT1G06180 | 8 | 0 | 5.20 | MYB3R- and R2R3- type MYB- encoding genes |
CCall_contig28632_v2 | AT1G13280 | 33 | 9 | 3.07 | allene oxide cyclase |
CCall_contig39585_v2 | AT1G13440 | 294 | 211 | 1.67 | Glyceraldehyde-3-phosphate dehydrogenase C2 |
CCall_contig27982_v2 | AT1G15520 | 26 | 8 | 2.90 | ABC transporter family |
CCall_contig42826_v2 | AT1G15950 | 66 | 56 | 1.43 | cinnamoyl CoA reductase |
CCall_contig13029_v2 | AT1G19180 | 45 | 30 | 1.78 | JAZ1 is a nuclear-localized protein |
CCall_contig9319_v2 | AT1G22450 | 35 | 37 | 1.12 | subunit 6b of cytochrome c oxidase |
CCall_contig48116_v2 | AT1G24020 | 9 | 0 | 5.37 | MLP-LIKE PROTEIN 423 (MLP423) |
CCall_contig22194_v2 | AT1G47128 | 94 | 87 | 1.31 | cysteine proteinase precursor- like protein |
CCall_contig8876_v2 | AT1G51470 | 8 | 0 | 5.20 | myrosinase. |
CCall_contig35286_v2 | AT1G52340 | 23 | 7 | 2.91 | cytosolic short-chain dehydrogenase/reductase |
CCall_contig38717_v2 | AT1G55020 | 19 | 0 | 6.44 | lipoxygenase |
CCall_contig12135_v2 | AT1G58440 | 15 | 5 | 2.78 | squalene monooxygenase activity. |
CCall_contig30860_v2 | AT1G59960 | 133 | 155 | 0.97 | aldo/keto reductase |
CCall_contig42753_v2 | AT1G64520 | 26 | 20 | 1.57 | Regulatory Particle non-ATPase 12a (RPN12a) |
CCall_contig1090_v2 | AT1G65930 | 80 | 109 | 0.75 | NADP +- isocitrate dehydrogenase |
CCall_contig24182_v2 | AT2G06050 | 25 | 16 | 1.84 | 12-oxophytodienoate reductase |
CCall_contig41807_v2 | AT2G16500 | 84 | 50 | 1.94 | arginine decarboxylase (ADC) |
CCall_contig12372_v2 | AT2G18950 | 19 | 13 | 1.74 | homogentisate phytyltransferase |
CCall_contig11468_v2 | AT2G22240 | 171 | 74 | 2.40 | Myo-inositol-1-phosphate synthase isoform 2 |
CCall_contig19221_v2 | AT2G26710 | 8 | 0 | 5.20 | cytochrome p450 family |
CCall_contig3763_v2 | AT2G30080 | 10 | 3 | 2.93 | member of Fe(II) transporter isolog family |
CCall_contig43865_v2 | AT2G30490 | 28 | 16 | 2.00 | cinnamate-4-hydroxylase |
CCall_contig3045_v2 | AT2G33150 | 56 | 71 | 0.85 | organellar 3-ketoacyl-CoA thiolase |
CCall_contig28249_v2 | AT2G37170 | 140 | 194 | 0.73 | plasma membrane intrinsic protein (PIP2) |
CCall_contig45019_v2 | AT2G38710 | 14 | 8 | 2.00 | AMMECR1 family |
CCall_contig22956_v2 | AT2G38870 | 39 | 0 | 7.48 | PR (pathogenesis-related) peptide |
CCall_contig28937_v2 | AT2G47510 | 10 | 2 | 3.52 | FUM1: fumarase |
CCall_contig3196_v2 | AT3G01280 | 47 | 56 | 0.94 | voltage-dependent anion channel |
CCall_contig46205_v2 | AT3G01420 | 7 | 0 | 5.00 | alpha-dioxygenase |
CCall_contig28792_v2 | AT3G04120 | 12 | 1 | 4.78 | cytosolic GADPH (C subunit) |
CCall_contig8907_v2 | AT3G04720 | 17 | 4 | 3.28 | similar to the antifungal chitin- binding |
CCall_contig41513_v2 | AT3G10920 | 42 | 26 | 1.89 | manganese superoxide dismutase (MSD1) |
CCall_contig3523_v2 | AT3G10985 | 36 | 34 | 1.28 | A senescence-associated gene |
CCall_contig27333_v2 | AT3G12360 | 39 | 34 | 1.39 | protein with an ankyrin motif |
CCall_contig39986_v2 | AT3G12490 | 39 | 33 | 1.44 | cysteine proteinase inhibitor activity |
CCall_contig42078_v2 | AT3G12500 | 73 | 13 | 3.69 | basic chitinase |
CCall_contig46415_v2 | AT3G23600 | 72 | 6 | 4.78 | dienelactone hydrolase family protein |
CCall_contig11692_v2 | AT3G45140 | 103 | 63 | 1.90 | Chloroplast lipoxygenase |
CCall_contig8863_v2 | AT4G01070 | 8 | 1 | 4.20 | glycosyltransferase (UGT72B1) |
CCall_contig11269_v2 | AT4G15480 | 217 | 99 | 2.33 | sinapic acid:UDP-glucose glucosyltransferase |
CCall_contig38534_v2 | AT4G34135 | 11 | 2 | 3.66 | flavonol 7-O-glucosyltransferase (EC 2.4.1.237) |
CCall_contig18339_v2 | AT4G37530 | 7 | 1 | 4.00 | peroxidase, putative |
CCall_contig4088_v2 | AT4G37980 | 150 | 15 | 4.52 | ELICITOR-ACTIVATED GENE 3-1 (ELI3-1) |
CCall_contig24556_v2 | AT4G37990 | 29 | 0 | 7.05 | aromatic alcohol:NADP + oxidoreductase |
CCall_contig16847_v2 | AT4G39980 | 8 | 0 | 5.20 | 2-deoxy-D-arabino-heptulosonate 7-phosphate synthase |
CCall_contig14020_v2 | AT5G06950 | 17 | 11 | 1.82 | Transcription factor of the B-ZIP family |
CCall_contig45136_v2 | AT5G14740 | 147 | 19 | 4.15 | beta carbonic anhydrase |
CCall_contig41707_v2 | AT5G42650 | 184 | 0 | 9.72 | cytochrome p450 CYP74 gene family |
CCall_contig46027_v2 | AT5G45340 | 16 | 0 | 6.20 | protein with ABA 8'-hydroxylase activity |
CCall_contig9507_v2 | AT5G52640 | 22 | 15 | 1.75 | cytosolic heat shock protein AtHSP90.1 |
CCall_contig42347_v2 | AT5G64250 | 13 | 4 | 2.90 | 2-nitropropane dioxygenase family /NPD family |