Table 2 Results of mass assembly of sequence reads from all libraries for each of American chestnut and Chinese chestnut into contigs1.
From: Chestnut resistance to the blight disease: insights from transcriptome analysis
Reads | Assembly V1 | Assembly V2 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Species | # 454 plates | # 454 reads | # of bp | AL2 of reads | #contigs | AL. of contigs | % of reads in contigs | # contigs | AL of contigs | % reads in contigs |
ACa3 | 2 | 398,783 | 78,183,046 | 197 bp | 22,714 | 374 | 59.4% | NA | NA | NA |
ACb4 | 1 | 688,198 | 146,479,551 | 200 | NA | NA | NA | 34,800 | 412 | 80.9% |
CCa5 | 3 | 838,472 | 171,849,098 | 207 | 32,738 | 501 | 66.8% | 48,501 | 526 | 87.4% |
CCb6 | 3 | 838,472 | 171,849,098 | 207 | NA | NA | NA | 48,335 | 543 | 87.7% |