Association analysis of photoperiodic flowering time genes in west and central African sorghum [Sorghum bicolor (L.) Moench]

Table 4 Sequence diversity of genes CRY1-b1, CRY2-2, SbD8, HD6, GI, and LHY-4 in sorghum

Gene	Fragment size (bp)	Predicted gene size (bp)	% gene targeted	S	π	Tajima's D
CRY1-b1	726	3954	18	15	0.002	-1.50
CRY2-2	657	3971	17	2	0.001	-2.67**
SbD8	528	2653	20	4	0.002	-1.27
HD6	804	6454	13	6	0.011	-2.62***
GI	960	8589	11	42	0.001	-2.72***
LHY-4	706	2110	34	6	0.012	-1.75

For each gene, the total predicted size and the size of amplified fragment, S number of polymorphic sites, π the pairwise nucleotide diversity and Tajima's D value are reported; **, *** significant at P < 0.01 and < 0.001, respectively

ISSN: 1471-2229