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Table 3 Number of small RNA clusters and loci generating 21-nt- or 24-nt-phased siRNAs

From: Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)

   

Root

 

Leaf

Category

Phase size (nt)

Control

Topping

Wounding

Wounding

Small RNA clusters

21

1890

5116

15252

6559

 

24

11726

37000

107765

84270

Phased siRNA generating loci (P > 1.4)

21

189

919

3098

973

 

24

1359

5244

20112

14681

Phased siRNA generating loci (P > 10)

21

13

50

220

57

 

24

7

115

691

508

  1. Loci homologous to known house-keeping noncoding RNAs, such as rRNA, tRNA, snRNA and snoRNA and overlapped with repeat sequences were excluded. The phase scores (P values) were calculated following the description in Howell et al. [42]