Skip to main content

Table 1 Summary of high-throughput sequencing of tobacco small RNAs from root and leaf

From: Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)

Category Root Leaf
  Control Topping Wounding Wounding
Total     
   Raw reads 3,074,948 5,186,473 5,510,747 4,722,862
   Unique raw reads 1,018,809 1,959,287 3,083,036 2,178,969
Mapped to GSS#     
   Reads 1,277,575 2,632,084 2,700,532 2,469,534
Specific in each library 206,310 477,279 803,960 491,809
Conserved in all libraries 782,079 1,667,977 1,085,172 1,312,822
   Unique 252,425 542,516 965,547 687,949
Specific in each libraries 148,981 385,469 702,522 442,337
Conserved in all libraries 25,780 25,780 25,780 25,780
   Singleton 202,567 417,905 761,185 534,409
Mapped to EST#     
   Reads 764,235 1,293,204 1,218,970 1,528,346
Specific in each libraries 43,758 99,553 137,509 107,459
Conserved in all libraries 563,565 985,513 811,452 1,165,580
   Unique 72,750 129,710 186,601 149,454
Specific in each libraries 32,875 77,511 116,666 84,638
Conserved in all libraries 14,001 14,001 14,001 14,001
   Singleton 48,486 88,566 131,515 102,406
  1. #Only 19-25-nt reads were counted