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Table 3 Characteristics of the QTLs detected for all traits in the two water treatments.

From: Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding

   

Well-watered

Water-limited

Trait Category

Trait Symbol

L.G.

Closest Marker

Pos.

Conf. Int.

Lod

Add.

R2

Closest Marker

Pos.

Conf. Int.

Lod

Add.

R2

Flowering

DFL

b07

Seq15C10_B

38

21-79

3.01

-0.74

9.3

.

.

.

.

.

.

Plant architecture

GH

a03

Seq19H03_A1

7.9

2-15

4.29

-1.19

14.1

.

.

.

.

.

.

  

a07

TC9H08_A

50

33-58

5.56

-0.16

17.3

.

.

.

.

.

.

  

b04

gi-0832_B

77.2

66.2-77.2

4.61

-0.71

14.1

.

.

.

.

.

.

  

b05

TC19D09_B

0

0-7

5.27

-0.25

16.2

.

.

.

.

.

.

  

b06

TC3H07_B

19

7-34

4.64

-0.46

13.9

.

.

.

.

.

.

  

b10

TC22G05_B

0

0-9

4.17

-0.48

9.8

.

.

.

.

.

.

 

PH

a04

TC9E08_A1

93

44-108

2.97

2.15

9.3

.

.

.

.

.

.

  

a07

TC9H08_A

53

35-63

9.37

-0.94

26.7

.

.

.

.

.

.

  

b04

gi-0832_B

77.2

61.6-77.2

4.82

-2.97

14.7

.

.

.

.

.

.

  

b08

AC2C12_B

17.1

12-22.8

4.41

-2.56

13.8

.

.

.

.

.

.

  

b10

TC22G05_B

0

0-16

4.2

-0.66

10.0

.

.

.

.

.

.

Pod morphology

PB

a02

RM2H10_A

62

43-68

3.93

0.22

8.5

seq11H01_A

15

1-65

4.33

0.28

12.6

  

a07

TC38F01_A

99

82-107.1

6.14

0.16

17.4

TC6G09_A

102

2-107

5.38

0.42

15.4

  

a08

RM5G08_A

44.7

29.7-62.7

5.05

0.34

13.1

.

.

.

.

.

.

  

a09

RN25B01_A

67.5

55.5-88.5

4.14

0.35

11.6

.

.

.

.

.

.

  

b06

TC19F05_B

50

14-80

4.35

-0.08

13.5

TC3H07_B

21.7

13-87

4.28

-0.56

12.5

  

b11

TC2A02_B

9

0-13

4.16

0.45

12.7

.

.

.

.

.

.

  

b02

.

.

.

.

.

.

TC1B02_B

5.9

0-32.9

4.04

0.30

11.8

 

PC

a02

RM2H10_A

64

43-68

8.31

1.05

23.9

.

.

.

.

.

.

  

a07

RN13D04_A

0

0-107.1

3.2

-0.69

10.0

.

.

.

.

.

.

  

a07

TC38F01_A

98

88-106

3.2

0.72

9.8

.

.

.

.

.

.

  

a08

TC1E05_A

93.7

81.7-96.1

6.39

0.61

19.0

.

.

.

.

.

.

  

a09

RN25B01_A

70.5

64.5-86.5

8.19

1.10

23.6

.

.

.

.

.

.

  

a10

AC2B03_A

25.6

21-81.3

4.9

-0.75

14.9

.

.

.

.

.

.

  

b11

TC2A02_B

8.2

3-12

4.49

0.85

13.7

.

.

.

.

.

.

 

PL

a07

RN13D04_A

0

0-7

2.97

-1.25

8.0

.

.

.

.

.

.

  

a08

.

.

.

.

.

.

TC1E05_A

90.3

81.7-96.1

4.34

1.29

12.0

  

a09

.

.

.

.

.

.

TC9B07_A

17.5

9.5-71.5

6.16

2.09

16.5

 

PWI

a07

seq2E06_A

7

2-107.1

4.16

-0.57

12.2

seq2E06_A

6

2-12

7.39

-0.86

21.1

  

a08

RM5G08_A

43.7

30.7-62.7

4.63

-0.77

14.4

.

.

.

.

.

.

  

a10

TC11B04_A2

52

37-67

3.13

0.48

8.1

TC11B04_A2

50

40-63

5.12

0.41

15.1

  

b02

TC1B02_B

0

0-8.9

7.35

-0.65

20.1

TC1B02_B

0

0-8.9

7.07

-0.78

20.3

  

b05

TC19D09_B

8

0-43

4.39

-0.56

13.3

PM050_B

10

1-39

5.02

-0.89

14.9

  

b06

TC19F05_B

52

16-83

4.49

0.35

12.8

TC19F05_B

52

22-64

7.86

0.55

22.3

Seed morphology

SL

a07

RN13D04_A

0

0-5

4.47

-0.13

12.5

RN13D04_A

0

0-9

3.85

-0.27

11.1

  

a08

TC1E05_A

85.7

23.7-96.1

3.7

0.53

10.5

.

.

.

.

.

.

  

a09

RN25B01_A

65.5

9.5-71.5

5.97

0.83

16.3

.

.

.

.

.

.

 

SWI

a07

seq2E06_A

5

2-10

8.62

-0.51

23.7

seq2E06_A

5

2-11

7.56

-0.46

20.7

  

a07

TC38F01_A

95

88-106

4.5

-0.46

8.7

TC38F01_A

95

88-106

5.1

-0.09

10.1

  

b02

TC1B02_B

0

0-7.9

4.88

-0.35

14.2

TC1B02_B

0

0-9.9

4.59

-0.37

13.1

  

b05

TC19D09_B

7

0-47.5

3.18

-0.32

9.5

seq19D06_B

35

4-46

3.81

-0.41

11.0

  

b06

.

.

.

.

.

.

TC3H07_B

27

8-62

3.91

0.29

11.3

Yield components

HI

a02

RI2A06_A

75

67-76.1

4.18

-1.07

11.0

RI2A06_A

76.1

73-76.1

6.18

-1.77

18.1

 

HPW

b02

TC1B02_B

0

0-10.9

5.5

-9.65

20.6

TC1B02_B

0

0-8.9

6.06

-12.38

17.0

  

b05

TC19D09_B

8

0-50

4.63

-14.90

15.1

PM050_B

7

0-52

5.27

-18.94

15.0

 

HSW

a07

seq2E06_A

3.7

0-10

5.53

-4.11

15.7

seq2E06_A

6

0-12

4.42

-4.86

12.4

  

b02

TC1B02_B

0

0-7.9

5.72

-4.21

16.3

TC1B02_B

0

0-10.9

5.37

-5.64

14.9

 

HW

a02

RI2A06_A

76

68-76.1

3.77

9.97

10.4

RI2A06_A

76.1

73-76.1

4.48

2.56

13.5

  

a05

.

.

.

.

.

.

gi-0385_A

21

0-32

5.94

4.72

17.5

  

b06

.

.

.

.

.

.

Seq18G01_B

104

93-104.4

3.18

3.76

9.7

 

PMAT

b03

PM003_B

28.1

27-48.6

3.44

0.01

9.3

.

.

.

.

.

.

 

PN

a01

TC2E05_A

4

0-26

3.03

1.96

9.3

TC19F05_B

44.9

27-92

4.11

-0.01

12.6

  

a05

gi-0385_A

17

1-34

4.88

2.00

14.2

TC2A02_B

11

2-15

3.1

0.02

9.6

 

PW

a01

TC2E05_A

0

1-10

3.82

2.60

11.7

.

.

.

.

.

.

 

SHW

a01

TC2E05_A

0

0-9

3.87

0.92

12.6

.

.

.

.

.

.

 

SN

a05

gi-0385_A

15

0-30

4.8

7.88

14.5

.

.

.

.

.

.

 

SW

b05

TC19E01_B

49

6-57.9

3.58

-1.91

11.0

.

.

.

.

.

.

 

TB

a05

gi-0385_A

8

0-26

4.42

11.79

13.2

gi-0385_A

18

0-31

5.63

7.00

16.6

  

b06

.

.

.

.

.

.

Seq18G01_B

104.4

93-104.4

3.39

5.64

11.0

Stress tolerance indices

STI-HPW

b02

.

.

.

.

.

.

TC1B02_B

0

1-8.9

6

-0.16

16.8

  

b05

.

.

.

.

.

.

TC19D09_B

7

0-51

4.86

-0.27

13.9

 

STI-HSW

a07

.

.

.

.

.

.

seq2E06_A

5

0-11

5.64

-0.15

15.5

  

b02

.

.

.

.

.

.

TC1B02_B

0

0-8.9

5.9

-0.16

16.2

 

STI-HW

a02

.

.

.

.

.

.

RI2A06_A

76

73-76.1

5.57

0.07

16.4

  

a05

.

.

.

.

.

.

gi-0385_A

15

0-27

5.85

0.17

17.1

 

STI-PN

a05

.

.

.

.

.

.

gi-0385_A

22

4.6-33

6.6

0.19

19.4

  

a07

.

.

.

.

.

.

RN13D04_A

0

0-13

3.38

0.16

10.4

 

STI-PW

a05

.

.

.

.

.

.

gi-0385_A

18

0-33

4.14

0.16

12.3

 

STI-SN

a07

.

.

.

.

.

.

RN13D04_A

0

0-21

3.57

0.22

11.0

 

STI-SW

a05

.

.

.

.

.

.

gi-0385_A

19

0-34

3.78

0.13

11.5

 

STI-TB

a05

.

.

.

.

.

.

gi-0385_A

15

0-27

7

0.17

20.1

  

b06

.

.

.

.

.

.

Seq18G01_B

104.4

94-104.4

3.56

0.12

10.8

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