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Table 3 Characteristics of the QTLs detected for all traits in the two water treatments.

From: Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding

    Well-watered Water-limited
Trait Category Trait Symbol L.G. Closest Marker Pos. Conf. Int. Lod Add. R2 Closest Marker Pos. Conf. Int. Lod Add. R2
Flowering DFL b07 Seq15C10_B 38 21-79 3.01 -0.74 9.3 . . . . . .
Plant architecture GH a03 Seq19H03_A1 7.9 2-15 4.29 -1.19 14.1 . . . . . .
   a07 TC9H08_A 50 33-58 5.56 -0.16 17.3 . . . . . .
   b04 gi-0832_B 77.2 66.2-77.2 4.61 -0.71 14.1 . . . . . .
   b05 TC19D09_B 0 0-7 5.27 -0.25 16.2 . . . . . .
   b06 TC3H07_B 19 7-34 4.64 -0.46 13.9 . . . . . .
   b10 TC22G05_B 0 0-9 4.17 -0.48 9.8 . . . . . .
  PH a04 TC9E08_A1 93 44-108 2.97 2.15 9.3 . . . . . .
   a07 TC9H08_A 53 35-63 9.37 -0.94 26.7 . . . . . .
   b04 gi-0832_B 77.2 61.6-77.2 4.82 -2.97 14.7 . . . . . .
   b08 AC2C12_B 17.1 12-22.8 4.41 -2.56 13.8 . . . . . .
   b10 TC22G05_B 0 0-16 4.2 -0.66 10.0 . . . . . .
Pod morphology PB a02 RM2H10_A 62 43-68 3.93 0.22 8.5 seq11H01_A 15 1-65 4.33 0.28 12.6
   a07 TC38F01_A 99 82-107.1 6.14 0.16 17.4 TC6G09_A 102 2-107 5.38 0.42 15.4
   a08 RM5G08_A 44.7 29.7-62.7 5.05 0.34 13.1 . . . . . .
   a09 RN25B01_A 67.5 55.5-88.5 4.14 0.35 11.6 . . . . . .
   b06 TC19F05_B 50 14-80 4.35 -0.08 13.5 TC3H07_B 21.7 13-87 4.28 -0.56 12.5
   b11 TC2A02_B 9 0-13 4.16 0.45 12.7 . . . . . .
   b02 . . . . . . TC1B02_B 5.9 0-32.9 4.04 0.30 11.8
  PC a02 RM2H10_A 64 43-68 8.31 1.05 23.9 . . . . . .
   a07 RN13D04_A 0 0-107.1 3.2 -0.69 10.0 . . . . . .
   a07 TC38F01_A 98 88-106 3.2 0.72 9.8 . . . . . .
   a08 TC1E05_A 93.7 81.7-96.1 6.39 0.61 19.0 . . . . . .
   a09 RN25B01_A 70.5 64.5-86.5 8.19 1.10 23.6 . . . . . .
   a10 AC2B03_A 25.6 21-81.3 4.9 -0.75 14.9 . . . . . .
   b11 TC2A02_B 8.2 3-12 4.49 0.85 13.7 . . . . . .
  PL a07 RN13D04_A 0 0-7 2.97 -1.25 8.0 . . . . . .
   a08 . . . . . . TC1E05_A 90.3 81.7-96.1 4.34 1.29 12.0
   a09 . . . . . . TC9B07_A 17.5 9.5-71.5 6.16 2.09 16.5
  PWI a07 seq2E06_A 7 2-107.1 4.16 -0.57 12.2 seq2E06_A 6 2-12 7.39 -0.86 21.1
   a08 RM5G08_A 43.7 30.7-62.7 4.63 -0.77 14.4 . . . . . .
   a10 TC11B04_A2 52 37-67 3.13 0.48 8.1 TC11B04_A2 50 40-63 5.12 0.41 15.1
   b02 TC1B02_B 0 0-8.9 7.35 -0.65 20.1 TC1B02_B 0 0-8.9 7.07 -0.78 20.3
   b05 TC19D09_B 8 0-43 4.39 -0.56 13.3 PM050_B 10 1-39 5.02 -0.89 14.9
   b06 TC19F05_B 52 16-83 4.49 0.35 12.8 TC19F05_B 52 22-64 7.86 0.55 22.3
Seed morphology SL a07 RN13D04_A 0 0-5 4.47 -0.13 12.5 RN13D04_A 0 0-9 3.85 -0.27 11.1
   a08 TC1E05_A 85.7 23.7-96.1 3.7 0.53 10.5 . . . . . .
   a09 RN25B01_A 65.5 9.5-71.5 5.97 0.83 16.3 . . . . . .
  SWI a07 seq2E06_A 5 2-10 8.62 -0.51 23.7 seq2E06_A 5 2-11 7.56 -0.46 20.7
   a07 TC38F01_A 95 88-106 4.5 -0.46 8.7 TC38F01_A 95 88-106 5.1 -0.09 10.1
   b02 TC1B02_B 0 0-7.9 4.88 -0.35 14.2 TC1B02_B 0 0-9.9 4.59 -0.37 13.1
   b05 TC19D09_B 7 0-47.5 3.18 -0.32 9.5 seq19D06_B 35 4-46 3.81 -0.41 11.0
   b06 . . . . . . TC3H07_B 27 8-62 3.91 0.29 11.3
Yield components HI a02 RI2A06_A 75 67-76.1 4.18 -1.07 11.0 RI2A06_A 76.1 73-76.1 6.18 -1.77 18.1
  HPW b02 TC1B02_B 0 0-10.9 5.5 -9.65 20.6 TC1B02_B 0 0-8.9 6.06 -12.38 17.0
   b05 TC19D09_B 8 0-50 4.63 -14.90 15.1 PM050_B 7 0-52 5.27 -18.94 15.0
  HSW a07 seq2E06_A 3.7 0-10 5.53 -4.11 15.7 seq2E06_A 6 0-12 4.42 -4.86 12.4
   b02 TC1B02_B 0 0-7.9 5.72 -4.21 16.3 TC1B02_B 0 0-10.9 5.37 -5.64 14.9
  HW a02 RI2A06_A 76 68-76.1 3.77 9.97 10.4 RI2A06_A 76.1 73-76.1 4.48 2.56 13.5
   a05 . . . . . . gi-0385_A 21 0-32 5.94 4.72 17.5
   b06 . . . . . . Seq18G01_B 104 93-104.4 3.18 3.76 9.7
  PMAT b03 PM003_B 28.1 27-48.6 3.44 0.01 9.3 . . . . . .
  PN a01 TC2E05_A 4 0-26 3.03 1.96 9.3 TC19F05_B 44.9 27-92 4.11 -0.01 12.6
   a05 gi-0385_A 17 1-34 4.88 2.00 14.2 TC2A02_B 11 2-15 3.1 0.02 9.6
  PW a01 TC2E05_A 0 1-10 3.82 2.60 11.7 . . . . . .
  SHW a01 TC2E05_A 0 0-9 3.87 0.92 12.6 . . . . . .
  SN a05 gi-0385_A 15 0-30 4.8 7.88 14.5 . . . . . .
  SW b05 TC19E01_B 49 6-57.9 3.58 -1.91 11.0 . . . . . .
  TB a05 gi-0385_A 8 0-26 4.42 11.79 13.2 gi-0385_A 18 0-31 5.63 7.00 16.6
   b06 . . . . . . Seq18G01_B 104.4 93-104.4 3.39 5.64 11.0
Stress tolerance indices STI-HPW b02 . . . . . . TC1B02_B 0 1-8.9 6 -0.16 16.8
   b05 . . . . . . TC19D09_B 7 0-51 4.86 -0.27 13.9
  STI-HSW a07 . . . . . . seq2E06_A 5 0-11 5.64 -0.15 15.5
   b02 . . . . . . TC1B02_B 0 0-8.9 5.9 -0.16 16.2
  STI-HW a02 . . . . . . RI2A06_A 76 73-76.1 5.57 0.07 16.4
   a05 . . . . . . gi-0385_A 15 0-27 5.85 0.17 17.1
  STI-PN a05 . . . . . . gi-0385_A 22 4.6-33 6.6 0.19 19.4
   a07 . . . . . . RN13D04_A 0 0-13 3.38 0.16 10.4
  STI-PW a05 . . . . . . gi-0385_A 18 0-33 4.14 0.16 12.3
  STI-SN a07 . . . . . . RN13D04_A 0 0-21 3.57 0.22 11.0
  STI-SW a05 . . . . . . gi-0385_A 19 0-34 3.78 0.13 11.5
  STI-TB a05 . . . . . . gi-0385_A 15 0-27 7 0.17 20.1
   b06 . . . . . . Seq18G01_B 104.4 94-104.4 3.56 0.12 10.8