Table 2 Differentially expressed transcription factors from papaya, tomato and grape
From: Analysis of ripening-related gene expression in papaya using an Arabidopsis-based microarray
Gene description | TAIR annotation | Log2 Fold† | Probe Set ID | ||
|---|---|---|---|---|---|
Papaya | Tomato†† | Grape††† | |||
AP2 domain protein RAP2.1 (RAP2 . 1) | AT1G46768 | −0.73 | 245807_at | ||
AP2 domain-containing protein | AT5G52020 | - | 4.15 | - | lesaffx.63544.1.s1_at |
AP2 domain-containing transcription factor | AT4G39780 | 0.54 | - | - | 252859_at |
AP2/ERF transcription factor | AT2G47520 | - | 2.18 | - | les.4102.1.s1_at |
AP2/ERF transcription factor 2 (ERF2) | AT1G15360 | 0.60 | - | - | 262595_at |
ATHB23 (A. thaliana HOMEOBOX PROTEIN 23) | AT1G26960 | 0.41 | - | - | 263690_at |
Auxin response factor-related protein 18 (ARF18) | AT3G61830 | 1.00 | - | - | 251289_at |
Basic helix-loop-helix (bHLH) family protein | AT2G34820 | 0.55 | - | - | 267426_at |
Basic helix-loop-helix (bHLH) family protein | AT3G61950 | 0.59 | - | - | 251299_at |
Basic helix-loop-helix (bHLH) family protein | AT4G09180 | - | 2.20 | - | lesaffx.19952.1.s1_at |
BLH7 (BELL1-LIKE HOMEODOMAIN 7) | AT2G16400 | 1.76 | - | - | 263557_at |
C2H2-type zinc finger protein -related | AT2G24500 | 0.86 | - | - | 265662_at |
Embryo-abundant protein-related | AT2G41380 | - | - | 3.26 | 1620276_at |
Eukaryotic translation initiation factor 6 (EIF-6) | AT3G55620 | 0.74 | - | - | 251776_at |
GATA transcription factor 1 | AT3G24050 | 0.36 | - | - | 256916_at |
KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) | AT5G25220 | - | 2.45 | - | lesaffx.67017.1.s1_at |
MADS-box protein - Floral homeotic protein PISTILLATA (PI) | NM* | - | - | 3.02 | 1614123_at |
MADS-box protein (AGL20) | AT2G45660 | - | - | 2.53 | 1612908_at |
MADS-box protein (AGL8) | AT5G60910 | 0.46 | - | - | 247553_at |
MADS-box protein (AGL8) - TDR4 transcription factor | AT5G60910 | - | 1.38 | - | les.4461.1.S1_s_at |
MADS-box transcription factor (AGL2 - MADS-RIN) | AT5G15800 | - | 3.97 | - | les.4450.1.s1_at |
MYB family transcription factor | AT2G30420 | 1.69 | - | - | 267495_at |
MYB family transcription factor | AT5G08520 | 0.83 | - | - | 250524_at |
MYB family transcription factor | AT5G45420 | 0.80 | - | - | 248954_at |
MYB10 (myb domain protein 10) | AT3G12820 | 0.72 | - | - | 257689_at |
MYB111 (myb domain protein 111) | AT3G46130 | - | 2.58 | - | les.4982.1.s1_at |
MYB19 (myb domain protein 19) | AT5G52260 | 0.39 | - | - | 248343_at |
MYB21 (myb domain protein 21) | AT3G27810 | - | 5.75 | - | lesaffx.70738.1.a1_at |
MYB43 (myb domain protein 43) | AT5G16600 | - | 2.66 | - | lesaffx.64717.1.a1_at |
MYB73 (myb domain protein 73) | AT4G37260 | 0.34 | - | - | 246253_at |
MYB75 (myb domain protein 75) - PRODUCTION OF ANTHOCYANIN PIGMENT 1 | NM | - | - | 3.74 | 1620959_s_at |
MYB95 (myb domain protein 95) | AT1G74430 | 0.46 | - | - | 260237_at |
MYR1 (MYB-RELATED PROTEIN 1) | AT3G04030 | 0.43 | - | - | 258807_at |
NAC domain protein (NAC13) | AT1G32870 | 0.79 | - | - | 261192_at |
NAC domain protein (NAC4) | NM | - | - | 2.05 | 1610466_at |
NAC domain protein (NAC42) | AT2G43000 | - | 1.30 | - | lesAffx.66359.1.S1_at |
NAC domain protein (NAC47) | AT3G04070 | - | - | 2.20 | 1607620_at |
Zinc finger (C2H2 type) family protein | AT1G68130 | - | - | 2.07 | 1613842_at |
Zinc finger (C2H2 type) family protein | AT5G66730 | 1.07 | - | - | 247054_at |