Table 1 Assessing different correlation thresholds in forming a co-expression network
From: Co-expression analysis identifies putative targets for CBP60g and SARD1 regulation
Gene correlation cut off (Spearman rank correlation) | 0.85 | 0.8 | 0.75 | 0.7 |
|---|---|---|---|---|
Number of probesets | 59 | 128 | 275 | 518 |
Mean number of GAAATT motifs per gene | 2.55 | 2.77 | 2.68 | 2.52 |
Genes with more than 3 GAAATT motifs | 19 | 45 | 90 | 145 |
Genes with more than 4 GAAATT motifs | 8 | 22 | 45 | 72 |
Genes with more than 5 GAAATT motifs | 5 | 17 | 24 | 38 |
Genes with more than 6 GAAATT motifs | 3 | 8 | 10 | 17 |
Genes with more than 7 GAAATT motifs | Â | 3 | 4 | 7 |