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Table 2 Profile and abundance of conserved miRNAs obtained from S. rebaudiana sRNA library

From: smRNAome profiling to identify conserved and novel microRNAs in Stevia rebaudiana Bertoni

miRNA family

miRNA

Sequence

Length (nt)

miRNA* sequenced

Reads

Homolog

156/157

miR156a

UGACAGAAGAGAGUGAGCACAUC

23

N

124

bna-MIR156a

 

miR156b

UGACAGAAGAGAGUGAGCAUC

21

N

124

ath-MIR156a

 

miR156c

UUGACAGAAGAUAGAGAGCACAC

23

N

124

ath-MIR157c

 

miR156d

UGACAGAAGAGAGUGAGCACAU

22

N

124

rco-MIR156d

 

miR156e

UGACAGAAGAGAGUGAGCACUC

22

N

3

ath-MIR156e

 

miR157a

UUGACAGAAGAUAGAGAGCACAC

23

N

1

ath-MIR157a

159

miR159a

UUUGGAUUGAAGGGAGCUCUAUC

23

N

11759

ath-MIR159a

 

miR159b

UUUGGAUUGAAGGGAGCUCAUC

22

N

11827

ath-MIR159b

 

miR159c

UUUGGAUUGAAGGGAGCUCUAAU

23

N

12411

vvi-MIR159c

 

miR159d

UUUGGAUUGAAGGGAGCUCUGUC

23

N

80

sof-MIR159d

 

miR159e

UUGGAUUGAAGGGAGCAUC

19

N

6

osa-MIR159e

 

miR159f

UUGGAUUGAAGGGAGCUCUAAU

22

N

136

osa-MIR159f

 

miR159j

UUUGGAUUGAAGGGAGCUCU

20

N

74

zma-MIR159j

 

mirR159k

UUUUGGAUUGAAGGGAGAUC

20

N

74

zma-MIR159k

160

miR160a

UGCCUGGCUCCCUGUAUGCCAA

22

N

1

ath-MIR160a

163

miR163

AGAUGACUUGGAACUUCGAUC

21

N

2

ath-MIR163

164

miR164c

UGGAGAAGCAGGGUACGUGCAUC

23

N

8

osa-MIR164c

 

miR164h

UGGAGAAGCAGGGCACGUAUC

21

N

2

zma-MIR164h

165

miR165a

UCGGACCAGACUUCAUCCCCCA

22

N

5

ath-MIR165a

 

miR165b

UCGGACCAGGCUUCAUCCCCCUC

24

N

5

ath-MIR165b

166

miR166a

UCGGACCAGGCUUCAUUCCCCAU

22

Y

412

ath-MIR166a

 

miR166b

UCGGACCAGGCUUCAUUCCAUC

23

N

398

crt-MIR166b

 

miR166c

UCGGACCAGGCUUCAUUCCUCAU

23

Y

357

mtr-MIR166c

 

miR166d

UCGGACCAGGCUUCAUUCCCCAC

23

Y

396

ath-MIR166d

 

miR166e

UCGGACCAGGCUUCAUUCCCCA

22

Y

292

ath-MIR166e

 

miR166f

UCUCGGACCAGGCUUCAUUC

20

N

379

bdi-MIR166f

 

miR166g

UCGGACCAGGCUUCAUUCCUCUC

23

Y

357

osa-MIR166g

 

miR166h

UCGGACCAGGCUUCAUUCCUCGA

23

N

357

osa-MIR166h

 

miR166i

UCGGACCAGGCUUCAUUCCCC

21

N

291

ath-MIR166b

 

miR166j

UCGGACCAGGCUUCAUAUC

19

N

291

ptc-MIR166j

 

miR166k

UCGGACCAGGCUUCAUUCCU

20

N

304

sbi-MIR166k

 

miR166l

UCGGACCAGGCUUCAUUCCUCAC

23

N

357

zma-MIR166l

 

miR166m

UCGGACCAGGCUUCAUUCCUCC

22

N

397

zma-MIR166m

 

miR166n

UCGGACCAGGCUUCAUUCCUUAU

23

N

370

ptc-MIR166n

 

miR166o

UCGGACCAGGCUUCAUUCCUUCG

23

N

286

ptc-MIR166o

 

miR166p

UCGGACCAGGCUCCAUUCC

19

N

1

ptc-MIR166p

 

miR166q

UCGGACCAGGCUUCAUUCCUUUC

23

N

286

ptc-MIR166q

167

miR167a

UGAAGCUGCCAGCAUGAUCUGAUC

24

N

9629

ccl-MIR167a

 

miR167b

UGAAGCUGCCAGCAUGAUCUAAUC

24

N

9637

bna-MIR167b

 

miR167c

GAAGCUGCCAGCAUGAUCUGAUC

23

N

7862

bdi-MIR167c

 

miR167d

UGAAGCUGCCAGCAUGAUCUGAU

23

N

7853

bdi-MIR167d

 

miR167e

UGAAGCUGCCAGCAUGAUCUGUC

23

N

73

osa-MIR167e

 

miR167f

UGAAGCUGCCAGCAUGAUCAUC

22

N

21

gma-MIR167f

 

miR167g

UGAAGCUGCCAGCAUGAUCUGA

22

N

7806

gma-MIR167g

 

miR167h

UGAAGCUGCCAGCAUGAUCUG

21

N

13

osa-MIR167h

 

miR167i

UGAAGCUGCCAGCAUGAUCUAC

22

N

65

sbi-MIR167i

 

miR167j

UGAAGCUGCCAGCAUGAUCUGC

22

N

13

osa-MIR167j

168

miR168a

UCGCUUGGUGCAGGUCGGGAAUC

23

Y

71

ath-MIR168a

 

miR168b

UCGCUUGGUGCAGGUCGGGAAU

22

Y

69

ath-MIR168b

169

miR169f

UAGCCAAGGAUGACUUGCCUAUC

23

N

7

osa-MIR169f

171

miR171a

UGAUUGAGCCGUGCCAAUA

19

N

10

osa-MIR171b

 

miR171b

UGAGCCGUGCCAAUAUCAUC

20

N

10

ath-MIR171b

 

miR171c

UUAUAGAGCCGUGCCAAUA

19

N

10

osa-MIR171c

 

miR171d

UGAUUGAGCCGUGCCAAUC

19

N

10

osa-MIR171d

172

miR172a

AGAAUCUUGAUGAUGCUGCAUUC

23

Y

20

ath-MIR172a

 

miR172b

AGAAUCUUGAUGAUGCUGCAUC

22

N

20

ath-MIR172b

 

miR172c

AGAAUCUUGAUGAUGCUGCAGAU

23

N

24

ath-MIR172c

 

miR172d

AGAAUCUUGAUGAUGCUGCAUAU

23

N

25

osa-miR172d

 

miR172e

AGAAUCUUGAUGAUGCUGCAUCA

23

N

20

tcc-MIR172e

 

miR172f

AGAAUCUUGAUGAUGCUGCA

20

N

20

ath-MIR172a

319

miR319a

UUGGACUGAAGGGAGCUCCCUUC

23

N

76

ath-MIR319a

 

miR319b

UUGGACUGAAGGGAGCUCCAUC

22

N

76

ath-MIR319b

 

miR319c

UUGGACUGAAGGGAGCUCCCU

21

N

78

vvi-MIR319c

 

miR319d

UUGGACUGAAGGGAGCAUC

19

N

23

ptc-MIR319d

 

miR319e

UUGGACUGAAGGGAGCUCCC

20

N

14

ppt-MIR319e

 

miR319f

UUGGACUGAAGGGAGCUCCCC

21

N

78

vvi-MIR319f

 

miR319g

UUGGACUGAAGGGAGCUCCCACC

23

N

528

vvi-MIR319g

 

miR319h

UGGACUGAAGGGAGCUCAUC

20

N

12

ptc-MIR319g

393

miR393a

UCCAAAGGGAUCGCAUUGAUCCC

23

N

4

ath-MIR393a

 

miR393b

UCCAAAGGGAUCGCAUUGAUCCAU

24

N

4

ath-MIR393b

 

miR393c

UCCAAAGGGAUCGCAUUUAUC

21

N

2

zma-MIR393a

 

miR393d

UCCAAAGGGAUCGCAUUGAUC

21

N

2

ptc-MIR393d

394

miR394a

UUGGCAUUCUGUCCACCUCCAUC

23

N

1554

vvi-MIR394a

 

miR394b

UUGGCAUUCUGUCCACCUCCUC

22

N

2

ath-MIR394b

 

miR394c

UUUGGCAUUCUGUCCACCUCCAU

23

N

1554

vvi-MIR394c

396

miR396a

UUCCACAGCUUUCUUGAACUAUC

23

Y

23

vvi-MIR396a

 

miR396b

UUCCACAGCUUUCUUGAACUUUC

23

Y

17

aqc-MIR396b

 

miR396c

UUCCACAGCUUUCUUGAACUUAU

23

N

17

osa-MIR396c

 

miR396d

UUCCACAGCUUUCUUGAACUUC

22

N

17

ptc-MIR396d

 

miR396e

UUCCACAGCUUUCUUGAACU

20

N

29

tcc-MIR396e

 

miR396f

UUCCACGGCUUUCUUGAACUGAU

23

N

32

ptc-MIR396f

 

miR396g

UUCCACGGCUUUCUUGAACAUC

22

N

2

ptc-MIR396g

397

miR397b

AUUGAGUGCAGCGUUGAUGAAUC

23

N

2

bdi-MIR397b

403

miR403a

UUAGAUUCACGCACAAACUCGUC

23

N

1

ptc-MIR403a

408

miR408a

UGCACUGCCUCUUCCCUUA

19

N

1

sof-MIR408a

 

miR408b

UGCACUGCCUCUUCCCUGGAUC

22

N

6

ppt-MIR408b

414

miR414

AUCAUCAUCAUCAUCAUCA

19

N

1

ath-MIR414

482

miR482a

UCUUCCCCACACCUCCCAU

19

N

1

gso-MIR482a

856

miR856*

UGAUGUUAAUUGUGGUAUC

19

Y

1

aly-MIR856

858

miR858

UUCGUUGUCUGUUCGACCUUGA

22

N

2

ath-MIR858b

894

miR894

CGUUUCACGUCAGGUUCACCA

21

N

17

ppt-MIR894

1310

miR1310

AUCGGGGGCGCAACGCCUC

19

N

2

pta-MIR1310

1317

miR1317

AAAUGAUCUUGGAGGUUAUC

20

N

3

osa-MIR1317

1511

miR1511

AACCUGGCUCUGAUACCAUC

20

N

1

gma-MIR1511

1850

miR1850

UGUUUAGUUGCCAUCAAUC

19

N

2

osa-MIR1850

2111

miR2111a

UAAUCUGCAUCCUGAGGUUUAUC

23

N

1

ath-MIR2111a

2916

miR2916

GGGGGCUCGAAGACGAUCAUC

21

N

68

peu-MIR2916

3520

miR3520

AGAGAGACUUUUGAAUUAUC

20

N

1

ahy-MIR3520

5084

miR5084

UAGAGUACUGUAGAGGAUC

19

N

1

tae-MIR5084

5139

miR5139

AACCUGGCUCUGAUACCAUC

20

N

2

rgl-MIR5139