Table 1 Distribution of the G. soja sequences in the Al-treated and Al-free libraries
From: Identification of wild soybean miRNAs and their target genes responsive to aluminum stress
RNA class | Al-treated | Al-free | ||
|---|---|---|---|---|
| Â | Counts | Percentage of total | Counts | Percentage of total |
Raw reads | 8,616,284 | 100.00% | 8,712,410 | 100.00% |
Number of reads removed due to 3ADTa not found | 974,498 | 11.31% | 1,411,300 | 16.20% |
Number of reads removed due to <15 bases after 3ADT cut | 345,537 | 4.01% | 260,266 | 2.99% |
Junk reads | 8,594 | 0.10% | 4,930 | 0.06% |
Number of mapped reads | 7,287,655 | 84.58% | 7,035,914 | 80.76% |
mRNAb | 6,310,043 | 86.59% | 6,114,595 | 86.91% |
Rfamc | 192,054 | 2.64% | 164,494 | 2.34% |
Repeatsd | 2,976 | 0.04% | 2,140 | 0.03% |
Known and predicted miRNAs | 184,734 | 2.53% | 124,343 | 1.77% |
No hit | 597,848 | 8.20% | 630,342 | 8.96% |