Table 8 List of target genes experimentally cleaved by miRNA
From: Identification of novel microRNAs in Hevea brasiliensisand computational prediction of their targets
miRNA family | Target name | Heveasequence name | miRNA accession | mfe kcal/mol | Alignment | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Hbmir156 | Squamosa promoter binding protein (HbSquamosa) | CL2120Contig2 | acc_480780 | -45.5 | miRNA Target | 23 766 | CUACACGAGAGAGAGAAGACAGU : ::::::::::::::::::::: GUUGUGCUCUCUCUCUUCUGUCA â–² 8/14 | 1 788 | |||
Hbmir160 | Auxin Response Factor (HbARF) | CL6582Contig1 | acc_370 | -52.2 | miRNA Target | 21 524 | ACCGUAUGUCCCUCGGUCCGU ::::::.:::::::::::::: UGGCAUGCAGGGAGCCAGGCA â–² 27/30 | 1 544 | |||
HbmiR398 | Chloroplastic copper zinc superoxide dismutase (HbCuZnSODchl) | CL4308Contig2 | acc_420 | -37.3 | miRNA Target | 23 456 | UAGU-C-CCCGCUGGACUCU-UGUGU .::: : :::.::::::.:: :::.: GUCAUGCGGGUGACCUGGGAAACAUA â–² 6/14 | 1 480 | |||