Table 7 List of predicted targets for putative novel miRNAs involved in response to stimulus, and in antioxidant and transcription regulator activities according to GO terms
From: Identification of novel microRNAs in Hevea brasiliensisand computational prediction of their targets
miRNA family | Accession number | GO term | Predicted target function | mfe kcal/mol | Target name |
|---|---|---|---|---|---|
HbmiRn1 | Acc_584359 | Response to stimulus | Aquaporin like protein | -47.70 | CL1Contig2288 |
| Â | Â | Transcription regulation activity | Helicase like protein | -31.10 | CL18570Contig1 |
HbmiRn2 | Acc_495109 | Response to stimulus | glycogen synthase kinase | -21.10 | CL1Contig2247 |
| Â | Â | Transcription regulation activity | TAZ zinc finger | -22.40 | CL5132Contig2 |
HbmiRn3 | Acc_185377 | Transcription regulation activity | MYC | -27.14 | CL1Contig2024 |
HbmiRn4 | Acc_108425 | Transcription regulation activity | bZIP domain trnscription factor | -29.10 | CL11387Contig1 |
| Â | Â | Â | Peroxidase | -28.30 | CL1Contig15444 |
| Â | Â | Response to stimulus | gamma-glutamylcysteine synthetase | -27.80 | CL786Contig2 |
HbmiRn5 | Acc_644211 | Â | CTR1 | -29.18 | CL3295Contig2 |
| Â | Â | Transcription regulation activity | Auxin-responsive protein | -29.20 | CL16079Contig1 |
| Â | Â | Â | GRAS family protein | -33.17 | CL2606Contig1 |
HbmiRn6 | Acc_501419 | Response to stimulus | ubiquitin fusion protein | -37.74 | CL1Contig4048 |
| Â | Â | Response to stimulus | heat shock protein | -27.50 | CL4213Contig3 |
| Â | Â | Â | heat shock protein | -23.79 | CL1Contig6482 |
| Â | Â | Â | glycerol kinase | -26.20 | CL6130Contig1 |
HbmiRn7 | Acc_35715 | Â | glycine-rich RNA-binding protein | -22.90 | CL2515Contig2 |
| Â | Â | Â | ubiquitin-protein ligase | -21.10 | CL7863Contig1 |
| Â | Â | Transcription regulation activity | NAC domain protein | -27.06 | CL678Contig1 |
| Â | Â | Â | LRR receptor-like protein kinase | -26.16 | CL6991Contig1 |
HbmiRn8 | Acc_246127 | Response to stimulus | SAUR family protein | -27.40 | CL3428Contig1 |
HbmiRn9 | Acc_103082 | Response to stimulus | Peroxidase | -35.30 | CL1Contig7525 |
HbmiRn10 | Acc_482742 | Response to stimulus | calcium-dependent protein kinase | -23.30 | CL1Contig9241 |
| Â | Â | Â | longevity assurance factor | -22.15 | CL8027Contig1 |