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Table 3 Differential expression of soybean miRNAs that target TAS3 and TAS4 Gene Homologs in Soybean

From: Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max

   

Normalized counts in each library per million readsa

   

Sequence

L

miRBase

Immature seed tissues

Vegetative tissue

miRNA gene originsb

Putative TAS genec

tasiRNA target and annotation

   

WS

SCR

SCM

SCW

Cot

GCot

ST

LE

   

AAGCTCAGGAGGGATAGCGCC

21

gma-miR390 a/d/e/f-5p

456

116

166

113

275

132

20

193

Gm18: 5,047,835

Glyma09g03730.1

Glyma07g32300.1 AUX-IAA-ARF

           

Gm18: 53,278,046

Glyma15g14670.1

Glyma13g24240.2 AUX-IAA-ARF

           

Gm11: 30,272,772

  
           

Gm03: 6,558,249

  
           

Gm01: 42,335,625

  

AAGCTCAGGAGGGATAGCACC

21

gma-miR390b/g-5p

24

6

2

2

153

60

165

12

Gm14: 47,097,986

Glyma09g03730.1

Glyma07g32300.1 AUX-IAA-ARF

           

Gm12: 44,954,768

Glyma15g14670.1

Glyma13g24240.2 AUX-IAA-ARF

TCTTGCTCAAATGAGTATTCCA

22

gma-miR828

0

7

6

7

0

0

0

0

Gm12: 3,213,774

Glyma20g32510.1

 
           

Gm11: 9,033,043

Glyma10g35050.1

 
            

Glyma20g32500.1

 
            

Glyma09g37340.1

 
  1. aLibrary abbreviations are in Table 1. bThe position of the miRNA hairpin in the Glycine max reference genome is shown. cThe gene model (Glyma number) of the putative TAS genes in soybean.
  2. L = sequence length.