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Table 2 Global analysis of gene annotation and gene ontology (GO) among gene set by traits

From: Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp

Trait Number of gene GO annotated / total number in the seta Percentage of annotated genesb Numbers of GO terms analyzed Number of GO significantly over-representedc Percentage of significant GO terms identifiedd
Height1 5217 / 5937 87.87 4323 34 0.78
Height2 3445 / 3882 88.74 3657 66 1.80
Circum1 4601 / 5276 87.20 4255 36 0.84
Circum2 3054 / 3457 88.34 3631 48 1.32
deltaH 2552 / 2856 89.35 3232 45 1.39
deltaC 4422 / 4990 88.61 4025 70 1.70
Syllep1 2168 / 2445 88.67 2993 124 4.14
SLA 3272 / 3712 88.14 3666 98 2.67
NM 4943 / 5609 87.56 4263 37 0.86
CM 4747 / 5405 87.82 4149 75 1.80
Δ 2450 / 2775 88.28 3363 51 1.51
  1. a Size of the total population is 40,668 genes and 35,467 have at least one correspondence with a GO term.
  2. b The mean is 88.23 ± 1.18 (95 % confidence interval).
  3. c Topology-Weighted analysis and p-value < 1 %.
  4. d The mean is 1.71 ± 1.90 (95 % confidence interval).