Table 1 Overview of sequencing and assembly
From: High-throughput sequencing of black pepper root transcriptome
Raw data | Â |
|---|---|
 Total number of reads | 71878419 |
 Number of unique high-quality reads | 13300000 |
 Number of contigs obtained with Velvet/Oases/STM- | 22363 |
Unigenes dataset | Â |
 Unigenes number | 10338 |
 Total size (bp) | 1787600 |
 Largest transcript length (bp) | 1314 |
 N50 length (bp) | 168 |
 No ATGC characters | 18 |
 Average coverage per base | 62 |
Predicted proteins | Â |
 Predicted CDS (partial/complete) | 4472 |
Gene expression | Â |
 Reads mapped in transcripts | 71148200 |
 Most expressed transcript (rpkm) | 68250 |