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Table 1 Putative ATAF2 target genes identified via a genomic pull-down assay

From: DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus

Clone #

AGI

Annotation

C7*

AT1G08540

RNA Polymerase sigma subunit

C9

AT3G61111

Structural constituent of ribosome

C18*

AT5G61810

Pentatricopeptide (PPR) repeat-containing protein

C20

AT5G39460

F-box family protein

C22

AT2G38940

AtPT2, phosphate transporter 2

C23

AT4G24660

Homeobox protein 22, AtHB22

C25

AT3G44470

Transposable element gene

C28*

AT4G07840

Transposable element gene

C30*

AT5G24350

Unknown protein

C32*

AT2G28390

SAND family protein

C33

AT2G02840

Unknown protein

C34*

AT1G68907

Defensin-like (DEFL) family protein

C37

AT4G05150

Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

C38

AT1G26620

Unknown protein

C39*

AT1G08370

DCP1 involved in mRNA decapping

C41

AT1G59820

AMINOPHOSPHOLIPID ATPASE3

C42

AT1G70170

Matrix metalloproteinase, MMP

C45*

AT3G19080

SWIB complex BAF60b domain-containing protein

C49

AT1G55060

Ubiquitin-like gene

C52*

AT3G26540

Pentatricopeptide (PPR) repeat-containing protein

C56

AT3G57220

UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase

C58

AT1G01210

DNA-directed RNA polymerase III family protein

C59

AT5G21482

Cytpkinin oxidase

C64

AT1G14180

Protein binding / zinc ion binding

C65*

AT3G01880

Unknown protein

C66*

AT5G27902

Transposable element gene

C81

AT2G37160

Transducin family protein / WD-40 repeat protein

C83*

AT4G13440

Calcium-binding EF hand family protein

C85

AT3G22300

Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10

C87

AT4G09584

Unknown pseudogene

C92

AT3G53365

Unknown gene

C96

AT5G13190

Unknown protein

C98

AT3G56600

Inositol or phosphatidylinositol kinase/ phosphotransferase

C100*

AT1G70070

EMB25, Embryo defective 25

C104*

AT3G62060

Pectinacetylesterase family protein

C107

AT4G01533

Unknown gene

C108*

AT4G19570

DNAJ heat shock N-terminal domain-containing protein

C109

AT3G10912

CPUORF63

C110*

AT4G22980

Unknown protein

C111

AT2G12230

Pseudogene, C-1-tetrahydrofolate synthase

C113*

AT3G11700

FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 PRECURSOR, FLA18

C115

AT4G20010

Plastid transcriptionally active 9 (PTAC9)

C116*

AT5G56550

Oxidative stress 3 (OXS3)

C120*

AT1G24070

Transposable element gene

C121

AT3G33100

Transposable element gene

C123*

At3G59050

Polyamine oxidase 3 (ATPAO3)

C131*

AT1G33010

F-box family protein

  1. The identified ATAF2 interacting sequences were upstream and within 3000 bp of a translation start codon. Those marked by an * are upstream and within 1000 bp of a start codon.