Table 2 Annotation of RNA-seq contigs and singletons
BLASTn vs | Flag leaf | Glumes | Grains |
|---|---|---|---|
| Â | No. of contigs | ||
HarvEST35 (e-20) | 33,743 | 24,416 | 30,077 |
UniProtKB/Swiss-Prot (e-20) | 1,196 | 542 | 635 |
UniProtKB/TrEMBL (e-10) | 3,573 | 2,183 | 2,302 |
non-redundant (e-5) | 754 | 386 | 453 |
Total hits | 39,266 | 27,527 | 33,467 |
Total no hits | 4,201 | 3,495 | 4,323 |
| Â | No. of singletons | ||
HarvEST35 (e-20) | 38,119 | 16,200 | 32,390 |
UniProtKB/Swiss-Prot (e-20) | 843 | 509 | 611 |
UniProtKB/TrEMBL (e-10) | 5,809 | 2,840 | 4,892 |
non-redundant (e-5) | 4,986 | 887 | 3,992 |
Total hits | 49,757 | 20,436 | 41,885 |
Total no hits | 47,591 | 8,952 | 40,561 |