From: Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
miRNA | Target genea | Align scoreb | Normalized reads at cleavage site (tpb)c | Categoryd | Target gene annotation |
---|---|---|---|---|---|
Conserved targets for conserved miRNAs | |||||
miR156 | ppa006611m | 3 | 150.2 | 3 | Squamosa promoter-binding-like protein |
miR156 | ppa007056m | 2 | 500.7 | 2 | Squamosa promoter-binding-like protein |
miR156 | ppa021582m | 2 | 1151.5 | 2 | Squamosa promoter-binding-like protein |
miR156 | ppa024285m | 3 | 3704.8 | 0 | Squamosa promoter-binding-like protein |
miR159 | ppa003628m | 3.5 | 2252.9 | 0 | MYB transcription factor |
miR160 | ppa002082m | 1 | 1301.7 | 2 | Auxin response factor |
miR160 | ppa002710m | 1 | 1251.6 | 2 | Auxin response factor |
miR164 | ppa007653m | 2.5 | 11214.7 | 0 | NAC domain-containing protein |
miR165 | ppa001343m | 2.5 | 2353.1 | 2 | Homeobox-leucine zipper protein |
miR165 | ppa001378m | 2.5 | 4856.3 | 0 | Homeobox-leucine zipper protein |
miR166 | ppa001343m | 3 | 2353.1 | 2 | Homeobox-leucine zipper protein |
miR166 | ppa001378m | 3 | 4856.3 | 0 | Homeobox-leucine zipper protein |
miR167 | ppa001179m | 4.5 | 1201.6 | 2 | Auxin response factor |
miR168 | ppa000619m | 4 | 275.4 | 2 | Argonaute protein |
miR168 | ppa000900m | 4 | 275.4 | 2 | Argonaute protein |
miR169 | ppa006634m | 3.5 | 1226.6 | 2 | Nuclear transcription factor Y subunit A |
miR390 | AJ875750 (EST) | Â | Â | Â | PpTAS3 |
miR393 | ppa003344m | 1 | 1401.8 | 2 | Auxin signaling F-box protein |
miR393 | ppa003465m | 2 | 550.7 | 3 | Auxin signaling F-box protein |
miR395 | ppa002425m | 2 | 600.8 | 2 | Sulfate transmembrane transporter |
miR396 | ppa003017m | 3.5 | 4005.2 | 0 | Growth-regulating factor |
miR396 | ppa006912m | 3 | 4956.5 | 2 | Growth-regulating factor |
miR396 | ppa011917m | 3.5 | 7960.4 | 0 | Growth-regulating factor |
miR396 | ppa019623m | 3 | 9312.2 | 0 | Growth-regulating factor |
miR396 | ppa021277m | 4 | 22179.0 | 0 | Growth-regulating factor |
miR396 | ppa022199m | 3 | 28086.7 | 0 | Growth-regulating factor |
miR396 | ppa024293m | 3 | 700.9 | 2 | Growth-regulating factor |
miR397 | ppa003308m | 4 | 550.7 | 2 | Laccase |
miR397 | ppa003408m | 3 | 300.4 | 3 | Laccase |
miR397 | ppa003646m | 1.5 | 9011.8 | 0 | Laccase |
miR397 | ppa003714m | 3 | 400.5 | 3 | Laccase |
miR397 | ppa022440m | 1.5 | 250.3 | 3 | Laccase |
miR408 | ppa018507m | 1 | 1051.4 | 2 | Copper ion binding protein |
miR408 | ppa021383m | 3 | 3104.1 | 2 | Copper ion binding protein |
Tas3-siRNA | ppa001557m | 2 | 650.9 | 2 | Auxin response factor |
Tas3-siRNA | ppa001392m | 1.5 | 22529.4 | 2 | Auxin response factor |
Novel targets for conserved miRNAs | Â | Â | Â | Â | Â |
miR396 | ppa003643m | 4 | 400.5 | 3 | Rho guanyl-nucleotide exchange factor |
miR408 | ppa004802m | 3.5 | 500.7 | 3 | Selenium-binding protein |
miR408 | ppa007350m | 4 | 3404.4 | 2 | Cyclin D3 |
Targets for other known miRNAs | Â | Â | Â | Â | Â |
miR505 | ppa012208m | 4.5 | 275.4 | 2 | ATP synthase |
miR505 | ppa012241m | 4.5 | 275.4 | 2 | ATP synthase |
miR530 | ppa004922m | 4 | 50.1 | 4 | ATP binding |
miR828 | ppa010908m | 1 | 55247.2 | 0 | MYB transcription factor |
miR828 | ppa016135m | 3 | 2152.8 | 2 | MYB transcription factor |
miR828 | ppa024533m | 2 | 1852.4 | 2 | MYB transcription factor |
miR858 | ppa005421m | 4.5 | 851.1 | 2 | 3-ketoacyl-CoA thiolase |
miR858 | ppa006057m | 4.5 | 851.1 | 2 | 3-ketoacyl-CoA thiolase |
miR858 | ppa006769m | 4 | 150.2 | 3 | MYB transcription factor |
miR858 | ppa009143m | 4 | 150.2 | 3 | MYB transcription factor |
miR858 | ppa010252m | 4 | 3754.9 | 2 | MYB transcription factor |
miR858 | ppa015883m | 3 | 650.9 | 0 | MYB transcription factor |
miR858 | ppa016135m | 3.5 | 16481.5 | 2 | MYB transcription factor |
miR858 | ppa016385m | 4 | 1201.6 | 0 | MYB transcription factor |
miR858 | ppa016708m | 4.5 | 650.9 | 2 | MYB transcription factor |
miR858 | ppa017136m | 3.5 | 35.0 | 3 | MYB transcription factor |
miR858 | ppa018561m | 4 | 1201.6 | 2 | MYB transcription factor |
miR858 | ppa019380m | 4 | 35.0 | 1 | MYB transcription factor |
miR858 | ppa022205m | 4 | 4070.3 | 0 | MYB transcription factor |
miR858 | ppa022431m | 4.5 | 6959.1 | 2 | MYB transcription factor |
miR858 | ppa022465m | 3.5 | 16481.5 | 0 | MYB transcription factor |
miR858 | ppa023768m | 2.5 | 3704.8 | 2 | MYB transcription factor |
miR858 | ppa023812m | 3.5 | 4070.3 | 0 | MYB transcription factor |
miR858 | ppa024074m | 4.5 | 4070.3 | 0 | MYB transcription factor |
miR894 | ppa005211m | 4 | 300.4 | 3 | Ankyrin repeat family protein |
miR2478 | ppa024560m | 4.5 | 300.4 | 3 | Disease resistance-responsive protein |
miR2911 | ppa004713m | 4.5 | 2052.7 | 2 | Vacuolar processing enzyme |
miR2916 | ppa008099m | 4.5 | 200.3 | 2 | Galacturonosyltransferase-like protein |
miR4171-5 | ppa010474m | 4.5 | 650.9 | 2 | C3HC4-type RING finger family protein |
miR4171-5 | ppa012554m | 4 | 150.2 | 3 | Universal stress protein (USP) |