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Table 1 Novel or candidate miRNAs identified from P. persica sRNA libraries

From: Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs

miRNA

miRNA sequence (5’-3’)

Length

Scaffolda

Match site

Strand

Normalized abundance (rpmb)

miRNA* sequence (5’-3’)

Root

Leaf

Flower

Fruit

Total

miRC1

ACCUGGCUCUGAUACCAUAAC

21

Scaffold_3

8575480

+

1571

908

13139

7818

23436

CGUGGUAUCAGAGUCAUGUUA

miRC2

UGAAGGAAGAUUUGUGGAAAG

21

Scaffold_7

18921374

-

1573

3962

117

53

5705

UUCCACAGAUCUUUCCUCAUU

miRC3

CUUCCCAAACCUCCCAUUCCUA

22

Scaffold_1

29648613

+

40

33

1288

2804

4165

GGAAUGGGAGGAUUGGGAAAA

miRC4

UGAGCAAUGGCACACAGCCCU

21

Scaffold_3

2185580

+

0

0

1273

1837

3110

UUGUGCCAUUGCUCAAGC

miRC5

UUUCCGAAACCUCCCAUUCCAA

22

Scaffold_1

29646139

+

60

3

515

2080

2658

GGGUGAGAGGUUGCCGGAAAGA

miRC6a

UUAUACAAUGAAAUCACGGCCG

22

Scaffold_1

2254120

+

1286

309

249

328

2172

GCCGUGUUUCUUUGUAUAAAG

miRC6b

UUAUACAAUGAAAUCACGGUCG

22

Scaffold_1

2244523

+

97

15

58

10

180

CCGUGUUUCCUUGUAUAAAG

miRC7

UGGCACCAAUGAUACCAAGUUU

22

Scaffold_7

18801272

-

0

0

986

404

1390

ACUUGGUAUCUUGGUGCCGGU

miRC8

CAGGAAAGAAUGUGAUGAGUA

21

Scaffold_2

2899303

+

24

469

11

0

504

UUUGCUCGUCACAUUCUUUCC

miRC9

UCGCAGGAGAGAUGGCACUGUC

22

Scaffold_3

19986823

-

109

16

0

0

125

UGGUGUCAUCCCUCCUGUGACC

miRC10

CGAACUUAUUGCAACUAGCUU

21

Scaffold_4

6342241

+

3

19

0

56

78

GCUAGGUGCAACAAGUUCAAU

miRC11

GGAGCGACCUGGGAUCACAUG

21

Scaffold_4

23714205

+

12

14

1

22

49

UGUGUUCUCAGGUCGCCCCUG

miRC12

UCUGAGUCAGAUUACUGAAUA

21

Scaffold_6

8360495

+

10

32

1

0

43

UUCAGUAUUUUGACUCAGAA

miRC13

ACUCUCCCUCAAAGGCUUCUAG

22

Scaffold_5

11892663

+

7

14

4

12

37

CGAAGCCUUUGGGGAGAGUAA

miRC14

UAGAGAGAUGGUCAGCAAUGU

21

Scaffold_4

14225624

+

3

3

1

26

33

AUUGCUGAUCACCUCUCUAAU

miRC15

CCACAUUUAUAGAUUACCUUG

21

Scaffold_7

10402743

-

0

0

9

20

29

CAAGGUAGUUUAUAAAUGUGG

miRC16

UUCAAAGGGUACAUCCACAGU

21

Scaffold_2

18505840

+

0

5

8

9

22

CAACUGUGGACAUACCCUUUG

miRC17

UCUGUCGUAGGAGAGAUGGCGC

22

Scaffold_3

19984391

-

9

0

0

12

21

UCAUCUCUCCUCGACUGAA

miRC18

UCGUGGGGAGAGAUCUAAUCG

21

Scaffold_7

18333173

-

0

0

6

12

18

AUUAGACCUCUCCCGACGAAA

miRC19

CCUCCCAUGCCACGCAUUUCUA

22

Scaffold_8

10608407

-

0

0

11

6

17

GAGAUGGGUGGCUGGGAAGGA

miRC20

AUUUCGACUAAUAACACAAUG

21

Scaffold_7

1039113

+

3

0

2

11

16

UUGUGUUAUUGGCCGAAAAUAG

miRC21

AUAAUAAUGUCCGGAUGUCAA

21

Scaffold_6

19901315

+

0

11

0

0

11

GAUAUCCGCACAUUAUUAUUG

miRC22

CCCUUCCAGUAAGGCACCCCC

21

Scaffold_5

13061652

+

0

0

1

10

11

GGGUUCCUUGUUGGAAGGACU

miRC23

AUUUCAGCUAAGUUGAGUUGU

21

Scaffold_3

13433851

+

0

1

8

1

10

AAUCAACUCAGCUUAGCUGAACUG

miRC24

UCCCUCAAGGGCUCCCAAUAUU

22

Scaffold_3

9747805

-

2

0

0

8

10

UGUUGGGGGCUCUUUUG

miRC25

UCAAUUAGAAAAUGAUAAGUG

21

Scaffold_6

7122989

+

0

0

5

2

7

CUUGUUAUUUUUUAAUUGAUU

miRC26

UCCAACGAUGGGUGACCACAA

21

Scaffold_7

16562805

-

0

0

2

5

7

UUUGUGGUCAUUCACCGUUGGA

miRC27

UCCUGUGCGAACGUCCAGAAG

21

Scaffold_1

498129

+

3

4

0

0

7

UAACUUCCGAACGUCCGCAUA

miRC28

CUUGUUAUUUUUUAAUUGAUU

21

Scaffold_6

9969911

-

0

0

4

1

5

AACCAAUUAGAAAAUAACAAGUGG

miRC29

AAAGACUAAAAUACCCUUGA

20

Scaffold_5

6250039

-

8

6

45

1

60

None detected

miRC30

UACUUGACCCCACAACUGGUU

21

Scaffold_1

27613921

+

1

6

13

24

44

None detected

miRC31

UGGGCACGCCAGAAUAAAGCAA

22

Scaffold_7

13727378

+

12

27

0

0

39

None detected

miRC32

UAAGGUUGAGCCGGAAAUCGGA

22

Scaffold_6

8366918

+

2

3

2

19

26

None detected

miRC33

CUCUUAAUCGUUGGAUCAAAUU

22

Scaffold_5

10113319

-

0

0

0

22

22

None detected

miRC34

UGCUUGUUGAGAUGUGCGGUU

21

Scaffold_8

6836158

+

17

1

0

1

19

None detected

miRC35

UGUGUUAAUCGUAGAAAAUAU

21

Scaffold_1

27061839

+

6

2

8

1

17

None detected

miRC36

AAUGUCACCUCCCACACUCCU

21

Scaffold_4

23445268

+

0

0

0

16

16

None detected

miRC37

UGGACGUCUAGAAAAAUACGG

21

Scaffold_4

23035470

+

7

8

0

0

15

None detected

miRC38

UUAAGCCCAAGAAAGCCCGAC

21

Scaffold_4

23839384

+

0

0

0

14

14

None detected

miRC39

ACCUCUUAUAGAUAGUCCCCA

21

Scaffold_3

193497

+

0

0

0

12

12

None detected

miRC40

AGACAGGUUCUUUUAUCUCAUG

22

Scaffold_1

22425519

-

0

0

3

9

12

None detected

miRC41

UCGAUUUUAUGUUUUAAGUAUC

22

Scaffold_4

22126310

+

0

0

6

5

11

None detected

miRC42

UCUGACUUUUACCAGAAUCUGA

22

Scaffold_5

11020912

+

3

0

0

5

8

None detected

miRC43

CAUUAGAGCGGUGGUACACAA

21

Scaffold_1

30892686

+

1

4

2

0

7

None detected

miRC44

UGCCAAGAAAGAGUUGCCCUA

21

Scaffold_3

1327042

-

0

3

2

0

5

None detected

miRC45

ACCUCCUCAUUCUAACCCCUCA

22

Scaffold_1

29656462

-

0

0

0

4

4

None detected

miRC46

UGCAUGCACCUUGAUAGAUGU

21

Scaffold_5

17169215

-

0

0

0

4

4

None detected

  1. aOnly a single mapped scaffold is shown here. All matched scaffolds are included in Additional file 6: Table S5. brpm, reads per million.