From: Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
miRNA | miRNA sequence (5’-3’) | Length | Scaffolda | Match site | Strand | Normalized abundance (rpmb) | miRNA* sequence (5’-3’) | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
Root | Leaf | Flower | Fruit | Total | |||||||
miRC1 | ACCUGGCUCUGAUACCAUAAC | 21 | Scaffold_3 | 8575480 | + | 1571 | 908 | 13139 | 7818 | 23436 | CGUGGUAUCAGAGUCAUGUUA |
miRC2 | UGAAGGAAGAUUUGUGGAAAG | 21 | Scaffold_7 | 18921374 | - | 1573 | 3962 | 117 | 53 | 5705 | UUCCACAGAUCUUUCCUCAUU |
miRC3 | CUUCCCAAACCUCCCAUUCCUA | 22 | Scaffold_1 | 29648613 | + | 40 | 33 | 1288 | 2804 | 4165 | GGAAUGGGAGGAUUGGGAAAA |
miRC4 | UGAGCAAUGGCACACAGCCCU | 21 | Scaffold_3 | 2185580 | + | 0 | 0 | 1273 | 1837 | 3110 | UUGUGCCAUUGCUCAAGC |
miRC5 | UUUCCGAAACCUCCCAUUCCAA | 22 | Scaffold_1 | 29646139 | + | 60 | 3 | 515 | 2080 | 2658 | GGGUGAGAGGUUGCCGGAAAGA |
miRC6a | UUAUACAAUGAAAUCACGGCCG | 22 | Scaffold_1 | 2254120 | + | 1286 | 309 | 249 | 328 | 2172 | GCCGUGUUUCUUUGUAUAAAG |
miRC6b | UUAUACAAUGAAAUCACGGUCG | 22 | Scaffold_1 | 2244523 | + | 97 | 15 | 58 | 10 | 180 | CCGUGUUUCCUUGUAUAAAG |
miRC7 | UGGCACCAAUGAUACCAAGUUU | 22 | Scaffold_7 | 18801272 | - | 0 | 0 | 986 | 404 | 1390 | ACUUGGUAUCUUGGUGCCGGU |
miRC8 | CAGGAAAGAAUGUGAUGAGUA | 21 | Scaffold_2 | 2899303 | + | 24 | 469 | 11 | 0 | 504 | UUUGCUCGUCACAUUCUUUCC |
miRC9 | UCGCAGGAGAGAUGGCACUGUC | 22 | Scaffold_3 | 19986823 | - | 109 | 16 | 0 | 0 | 125 | UGGUGUCAUCCCUCCUGUGACC |
miRC10 | CGAACUUAUUGCAACUAGCUU | 21 | Scaffold_4 | 6342241 | + | 3 | 19 | 0 | 56 | 78 | GCUAGGUGCAACAAGUUCAAU |
miRC11 | GGAGCGACCUGGGAUCACAUG | 21 | Scaffold_4 | 23714205 | + | 12 | 14 | 1 | 22 | 49 | UGUGUUCUCAGGUCGCCCCUG |
miRC12 | UCUGAGUCAGAUUACUGAAUA | 21 | Scaffold_6 | 8360495 | + | 10 | 32 | 1 | 0 | 43 | UUCAGUAUUUUGACUCAGAA |
miRC13 | ACUCUCCCUCAAAGGCUUCUAG | 22 | Scaffold_5 | 11892663 | + | 7 | 14 | 4 | 12 | 37 | CGAAGCCUUUGGGGAGAGUAA |
miRC14 | UAGAGAGAUGGUCAGCAAUGU | 21 | Scaffold_4 | 14225624 | + | 3 | 3 | 1 | 26 | 33 | AUUGCUGAUCACCUCUCUAAU |
miRC15 | CCACAUUUAUAGAUUACCUUG | 21 | Scaffold_7 | 10402743 | - | 0 | 0 | 9 | 20 | 29 | CAAGGUAGUUUAUAAAUGUGG |
miRC16 | UUCAAAGGGUACAUCCACAGU | 21 | Scaffold_2 | 18505840 | + | 0 | 5 | 8 | 9 | 22 | CAACUGUGGACAUACCCUUUG |
miRC17 | UCUGUCGUAGGAGAGAUGGCGC | 22 | Scaffold_3 | 19984391 | - | 9 | 0 | 0 | 12 | 21 | UCAUCUCUCCUCGACUGAA |
miRC18 | UCGUGGGGAGAGAUCUAAUCG | 21 | Scaffold_7 | 18333173 | - | 0 | 0 | 6 | 12 | 18 | AUUAGACCUCUCCCGACGAAA |
miRC19 | CCUCCCAUGCCACGCAUUUCUA | 22 | Scaffold_8 | 10608407 | - | 0 | 0 | 11 | 6 | 17 | GAGAUGGGUGGCUGGGAAGGA |
miRC20 | AUUUCGACUAAUAACACAAUG | 21 | Scaffold_7 | 1039113 | + | 3 | 0 | 2 | 11 | 16 | UUGUGUUAUUGGCCGAAAAUAG |
miRC21 | AUAAUAAUGUCCGGAUGUCAA | 21 | Scaffold_6 | 19901315 | + | 0 | 11 | 0 | 0 | 11 | GAUAUCCGCACAUUAUUAUUG |
miRC22 | CCCUUCCAGUAAGGCACCCCC | 21 | Scaffold_5 | 13061652 | + | 0 | 0 | 1 | 10 | 11 | GGGUUCCUUGUUGGAAGGACU |
miRC23 | AUUUCAGCUAAGUUGAGUUGU | 21 | Scaffold_3 | 13433851 | + | 0 | 1 | 8 | 1 | 10 | AAUCAACUCAGCUUAGCUGAACUG |
miRC24 | UCCCUCAAGGGCUCCCAAUAUU | 22 | Scaffold_3 | 9747805 | - | 2 | 0 | 0 | 8 | 10 | UGUUGGGGGCUCUUUUG |
miRC25 | UCAAUUAGAAAAUGAUAAGUG | 21 | Scaffold_6 | 7122989 | + | 0 | 0 | 5 | 2 | 7 | CUUGUUAUUUUUUAAUUGAUU |
miRC26 | UCCAACGAUGGGUGACCACAA | 21 | Scaffold_7 | 16562805 | - | 0 | 0 | 2 | 5 | 7 | UUUGUGGUCAUUCACCGUUGGA |
miRC27 | UCCUGUGCGAACGUCCAGAAG | 21 | Scaffold_1 | 498129 | + | 3 | 4 | 0 | 0 | 7 | UAACUUCCGAACGUCCGCAUA |
miRC28 | CUUGUUAUUUUUUAAUUGAUU | 21 | Scaffold_6 | 9969911 | - | 0 | 0 | 4 | 1 | 5 | AACCAAUUAGAAAAUAACAAGUGG |
miRC29 | AAAGACUAAAAUACCCUUGA | 20 | Scaffold_5 | 6250039 | - | 8 | 6 | 45 | 1 | 60 | None detected |
miRC30 | UACUUGACCCCACAACUGGUU | 21 | Scaffold_1 | 27613921 | + | 1 | 6 | 13 | 24 | 44 | None detected |
miRC31 | UGGGCACGCCAGAAUAAAGCAA | 22 | Scaffold_7 | 13727378 | + | 12 | 27 | 0 | 0 | 39 | None detected |
miRC32 | UAAGGUUGAGCCGGAAAUCGGA | 22 | Scaffold_6 | 8366918 | + | 2 | 3 | 2 | 19 | 26 | None detected |
miRC33 | CUCUUAAUCGUUGGAUCAAAUU | 22 | Scaffold_5 | 10113319 | - | 0 | 0 | 0 | 22 | 22 | None detected |
miRC34 | UGCUUGUUGAGAUGUGCGGUU | 21 | Scaffold_8 | 6836158 | + | 17 | 1 | 0 | 1 | 19 | None detected |
miRC35 | UGUGUUAAUCGUAGAAAAUAU | 21 | Scaffold_1 | 27061839 | + | 6 | 2 | 8 | 1 | 17 | None detected |
miRC36 | AAUGUCACCUCCCACACUCCU | 21 | Scaffold_4 | 23445268 | + | 0 | 0 | 0 | 16 | 16 | None detected |
miRC37 | UGGACGUCUAGAAAAAUACGG | 21 | Scaffold_4 | 23035470 | + | 7 | 8 | 0 | 0 | 15 | None detected |
miRC38 | UUAAGCCCAAGAAAGCCCGAC | 21 | Scaffold_4 | 23839384 | + | 0 | 0 | 0 | 14 | 14 | None detected |
miRC39 | ACCUCUUAUAGAUAGUCCCCA | 21 | Scaffold_3 | 193497 | + | 0 | 0 | 0 | 12 | 12 | None detected |
miRC40 | AGACAGGUUCUUUUAUCUCAUG | 22 | Scaffold_1 | 22425519 | - | 0 | 0 | 3 | 9 | 12 | None detected |
miRC41 | UCGAUUUUAUGUUUUAAGUAUC | 22 | Scaffold_4 | 22126310 | + | 0 | 0 | 6 | 5 | 11 | None detected |
miRC42 | UCUGACUUUUACCAGAAUCUGA | 22 | Scaffold_5 | 11020912 | + | 3 | 0 | 0 | 5 | 8 | None detected |
miRC43 | CAUUAGAGCGGUGGUACACAA | 21 | Scaffold_1 | 30892686 | + | 1 | 4 | 2 | 0 | 7 | None detected |
miRC44 | UGCCAAGAAAGAGUUGCCCUA | 21 | Scaffold_3 | 1327042 | - | 0 | 3 | 2 | 0 | 5 | None detected |
miRC45 | ACCUCCUCAUUCUAACCCCUCA | 22 | Scaffold_1 | 29656462 | - | 0 | 0 | 0 | 4 | 4 | None detected |
miRC46 | UGCAUGCACCUUGAUAGAUGU | 21 | Scaffold_5 | 17169215 | - | 0 | 0 | 0 | 4 | 4 | None detected |