Figure 6
Effect of coverage on SNP conversion rates and mapping with the GPC-B1 interval. Polymorphic SNPs include those mapping within and outside of GPC-B1. N indicates the total number of functional assays considered for each coverage depth. Although the proportion of total SNPs that map within GPC-B1 increases, the relative proportion of polymorphic SNPs that map to GPC-B1 remains between 67 and 72%. Only SNPs identified using the Maq-120 pipeline were considered for this analysis.