Table 1 Abiotic stress-regulated miRNAs identified in rice inflorescences
MiRNA | Family | *Log2 (Drought/Ctrl) | *Log2 (Cold/Ctrl) | *Log2 (Salt/Ctrl) | Putative target | |||
|---|---|---|---|---|---|---|---|---|
AAUUCACAGGCCCUAUCUUGUG | miR1428 | −2.71 | ↓ | −0.82 |  | −0.15 |  | Cytochrome c |
CUUGGAUUGAAGGGAGCUCU | miR159 | 0.03 |  | 0.99 |  | −1.57 | ↓ | MYB family transcription factor |
UGCCUGGCUCCCUGUAUGCCA | miR160 | 0.28 |  | 0.29 |  | −1.07 | ↓ | Auxin response factor |
UGCCUGGCUCCCUGAAUGCCA | miR160 | 1.40 | ↑ | 0.60 |  | −0.37 |  | Auxin response factor |
GGAAUGUUGUCUGGCUCGGGG | miR166 | −1.69 | ↓ | −0.65 |  | −0.96 |  | START domain containing protein |
GGAAUGUUGUCUGGUCCGAGA | miR166 | −2.68 | ↓ | 0.08 |  | −0.63 |  | START domain containing protein |
UGAAGCUGCCAGCAUGAUCUA | miR167 | 1.02 | ↑ | 0.81 |  | −0.79 |  | Auxin response factor |
UAUGCGUAAGACGGAUUCGUA | miR1856 | 0.72 |  | 1.29 | ↑ | 0.95 |  |  |
GAGGGAUUUUGCGGGAAUUUCACG | miR1866 | −4.67 | ↓ | −7.00 | ↓ | −1.49 | ↓ | Hypotethical protein |
UUCAGUUUCCUCUAAUAUCUCG | miR2275d | 1.46 | ↑ | 1.62 | ↑ | 0.09 |  |  |
CUUGUUUUUCUCCAAUAUCUCA | miR2275e | 1.37 | ↑ | 1.83 | ↑ | 0.15 |  |  |
AUUGUUUUUCUCCAAUAUCUCA | miR2275c | 1.32 | ↑ | 1.32 | ↑ | −0.02 |  |  |
UAUUUUAGUUUCUAUGGUCAC | miR2871 | 1.12 | ↑ | 1.96 | ↑ | 1.56 | ↑ | Glycosyltransferase family protein |
UUGGACUGAAGGGUGCUCCC | miR319 | −0.46 |  | −0.09 |  | −1.46 | ↓ | TCP family transcription factor |
UCCAAAGGGAUCGCAUUGAUC | miR393 | 1.26 | ↑ | 0.98 |  | 0.55 |  | F-box domain and LRR containing protein |
UCAGUGCAAUCCCUUUGGAAU | miR393 | 0.99 |  | 1.08 | ↑ | 0.21 |  | MYB family transcription factor |
UUGGCAUUCUGUCCACCUCC | miR394 | 0.21 |  | 1.19 | ↑ | −2.94 | ↓ | F-box domain containing protein |
UUCCACAGCUUUCUUGAACUG | miR396 | 0.69 |  | 1.09 | ↑ | 0.34 |  | Growth regulating factor |
UUCCACAGCUUUCUUGAACUU | miR396 | 1.03 | ↑ | 2.09 | ↑ | −0.14 |  | Growth regulating factor |
UCCACAGGCUUUCUUGAACUG | miR396 | 1.17 | ↑ | 1.32 | ↑ | 0.06 |  | Growth-regulating factor |
UGGAAGGGGCAUGCAGAGGAG | miR528 | −0.70 |  | −0.46 |  | −1.39 | ↓ | Plastocyanin-like domain containing protein |
AGAAGAGAGAGAGUACAGCCU | miR529 | 1.41 | ↑ | 1.35 | ↑ | 0.79 |  | SBP-box gene family |
AGGUGCAGAGGCAGAUGCAAC | miR530-3p | −2.23 | ↓ | 1.09 | ↑ | −2.06 | ↓ | Hairpin-induced protein 1 domain containing protein |
UUGCUCUGAUACCAAUUGUCGG | osa-cand027 | 2.35 | ↑ | 0.60 |  | −0.72 |  |  |
GAAGCUGCAGCUGUCAGAAGCUCC | osa-cand032 | −0.01 |  | −0.64 |  | −1.18 | ↓ |  |
AAUGGCUUGUCUUGUUUUGUGUGC | osa-cand042 | −0.62 |  | −2.82 | ↓ | −1.24 | ↓ |  |
UACAACUUCUUGUUGAUGGAAACU | osa-cand052 | −3.66 | ↓ | −7.49 | ↓ | −0.92 |  |  |
UAAAUGGAGAGAACGAAAGAG | osa-cand056 | 1.25 | ↑ | 0.96 |  | 0.32 |  |  |