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Table 1 Grapevine STS members identified based on the PN40024 12X V1 coverage

From: Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses

Proposed nomenclature

Chr

PN40024 12X V1 Location

Closest prediction 12X V1

ORF predicted

VvSTS1

10

14216112..14217677

Vv10s0042g00840

Unsure

Vv10s0042g00850

Vv10s0042g00860

VvSTS2

10

14246945..14248453

Vv10s0042g00870

No

VvSTS3

10

14264038..14265601

Vv10s0042g00880

Unsure

Vv10s0042g00890

VvSTS4

10

14284187..14285750

Vv10s0042g00910

Unsure

VvSTS5

10

14298957..14300520

Vv10s0042g00920

Yes

VvSTS6

10

14304787..14306350

Vv10s0042g00930

Yes

VvSTS7

16

16239028..16240564

Vv16s0100g00750

Yes

VvSTS8

16

16252494..16254029

Vv16s0100g00760

Unsure

VvSTS9

16

16268816..16270352

Vv16s0100g00770

Yes

VvSTS10

16

16276570..16278105

Vv16s0100g00780

Yes

VvSTS11

16

16285039..16284807

-

No

VvSTS12

16

16287922..16286924

Vv16s0100g00800

Unsure

VvSTS13

16

16290882..16289536

Vv16s0100g00810

Unsure

VvSTS14

16

16324386..16323781

-

No

VvSTS15

16

16335697..16337233

Vv16s0100g00830

Yes

VvSTS16

16

16344516..16343202

Vv16s0100g00840

Yes

VvSTS17

16

16347949..16346580

Vv16s0100g00850

Yes

VvSTS18

16

16351428..16350059

Vv16s0100g00860

Yes

VvSTS19

16

16368410..16366907

Vv16s0100g00880

Yes

VvSTS20

16

16387529..16386013

Vv16s0100g00900

Yes

VvSTS21

16

16398234..16399770

Vv16s0100g00910

Yes

VvSTS22

16

16406519..16405205

Vv16s0100g00920

Yes

VvSTS23

16

16409837..16408469

Vv16s0100g00930

Yes

VvSTS24

16

16413317..16411948

Vv16s0100g00940

Yes

VvSTS25

16

16431392..16430833

Vv16s0100g00950

Unsure

VvSTS26

16

16440652..16441618

Vv16s0100g00960

No

VvSTS27

16

16468549..16467015

Vv16s0100g00990

Yes

VvSTS28

16

16478613..16477097

Vv16s0100g01000

Yes

VvSTS29

16

16493131..16491597

Vv16s0100g01010

Yes

VvSTS30

16

16505168..16503636

Vv16s0100g01020

Yes

VvSTS31

16

16509479..16507942

Vv16s0100g01030

Yes

VvSTS32

16

16511216..16512602

Vv16s0100g01040

Yes

VvSTS33

16

16521936..16520374

Vv16s0100g01060

No

VvSTS34

16

16523861..16523409

-

No

VvSTS35

16

16527862..16526326

Vv16s0100g01070

Yes

VvSTS36

16

16557435..16555945

Vv16s0100g01100

Yes

VvSTS37

16

16588984..16587447

Vv16s0100g01110

Yes

VvSTS38

16

16608730..16607176

Vv16s0100g01110

Yes

VvSTS39

16

16617258..16615702

Vv16s0100g01120

Yes

VvSTS40

16

16620545..16618991

-

No

VvSTS41

16

16624624..16623088

Vv16s0100g01130

Yes

VvSTS42

16

16629091..16627536

Vv16s0100g01140

Yes

VvSTS43

16

16645747..16644190

Vv16s0100g01150

Yes

VvSTS44

16

16649027..16647473

 

No

VvSTS45

16

16675524..16673986

Vv16s0100g01160

Yes

VvSTS46

16

16684264..16682709

Vv16s0100g01170

Yes

VvSTS47

16

16699842..16698303

Vv16s0100g01190

Yes

VvSTS48

16

16711818..16710281

Vv16s0100g01200

Yes

  1. Genes have been named from VvSTS1 to VvSTS48 based on the chromosomal location. The chromosomal location and corresponding identifier on the 12X V1 coverage are also provided. The predicted open reading frame (ORF) prediction was assigned as follows: Yes: genes encoding a complete ORF; Unsure: genes for which it was not possible to determine with certainty whether they encode a full length or truncated ORF based on available sequence information from the PN40024 and PN ENTAV 115 genotypes and specifically matching paired-end reads obtained from the whole-transcriptome sequencing of Pinot noir clone 115; No: genes encoding for a truncated ORF.
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BMC Plant Biology

ISSN: 1471-2229

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