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Table 3 Composition of the mRNA degradome libraries

From: miRNA regulation in the early development of barley seed

Degradome length

Sequences (million)

Signatures (million)

A

B

C

Total

A

B

C

Total

20-36 nt

29.741

29.282

27.365

86.389

3.800

5.526

3.168

10.147

20 nt

13.150

11.949

12.103

37.203

1.724

2.393

1.411

4.502

21 nt

16.525

17.239

15.188

48.952

2.066

3.110

1.746

5.607

20-21 nt pooled

29.675

29.188

27.291

86.155

3.433

4.814

2.928

8.857

  1. Number of sequences and signatures (unique sequences) of mRNA degradation products found in the degradome libraries made from whole caryopsis tissue at the three developmental stages A (1–5 DPA), B (6–10 DPA) and C (11–15 DPA). The 20–21 nt pooled degradome sequences combine the 20 nt and 21 nt sequences shortened to 20 nt by removing the 3’end nucleotide.
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BMC Plant Biology

ISSN: 1471-2229

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