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Table 2 miRNA precursors and corresponding known and new miRNAs

From: miRNA regulation in the early development of barley seed

Row

EST ID

pri-miRNA

miRNA

miRNA sequence (5’-3’)

Length

RPM-A

RPM-B

RPM-C

Star

1

U21_20916

hvu-MIR159a

hvu-miR159

TTTGGATTGAAGGGAGCTCTG

21

2.74

2.16

1.29

YES

2

U21_9346

hvu-MIR168

hvu-miR168a

TCGCTTGGTGCAGATCGGGAC

21

5891.89

16016.44

12430.78

YES

3

U21_38648

hvu-MIR171

hvu-miR171a

TGATTGAGCCGTGCCAATATC

21

13.41

5.13

3.87

YES

4

U21_6953

hvu-MIR444a

hvu-miR444a

TTGTGGCTTTCTTGCAAGTCG

21

0.41

0.41

0.26

NO

5

U21_50801

hvu-MIR5051

hvu-miR5051

TTTGGCACCTTGAAACTGGGA

21

0.41

0.54

0.39

NO

6

U21_37849

hvu-MIR1135

Hvu-miR1135

TGCGACAAGTAATTCCGGACGGAG

24

0.27

0.68

1.68

NO

7

U21_8425

hvu-MIR1436b

hvu-miR1436b

TACATTATGGGACGGAGGGAG

21

0.82

1.08

0.26

NO

8

U21_2275

hvu-MIR5048

hvu-miR5048

TATTTGCAGGTTTTAGGTCTAA

22

111.82

122.18

89.92

YES

9

U21_14449

hvu-MIR5071b

hvu-miR5071b

TCAAGCATCATGTCATGGACC

21

0.55

0.54

0.26

NO

10

U21_51424

hvu-MIR6001

hvu-miR6001

CGAGGATGAAGAAGAAAAT

19

3.15

1.62

0.90

NO

11

U21_16909

hvu-MIR6002

hvu-miR6002

TAGGACGCCATGGTAGATAGCATG

24

0.00

1.22

1.03

NO

12

U21_27580

hvu-MIR6003

hvu-miR6003

AATATGGATCGGAGGGAGTAA

21

0.68

0.95

0.52

NO

13

U21_53039

hvu-MIR6004

hvu-miR6004

TTGCGTCGTTGTGCCTGGGCT

21

0.96

0.41

0.00

NO

14

U21_51897

hvu-MIR6005

hvu-miR6005

AATTAATTTGGATCGGAGGGA

21

0.41

0.27

0.65

NO

15

U21_16332

hvu-MIR1120

hvu-miR1120b

TTCTTATATTATGGGACGGAG

21

4.11

4.46

5.29

NO

  1. The pri-miRNAs were identified in the harvEST dataset according to their ability to form a hairpin-like secondary structure that could generate one of the smRNAs present in the libraries. For each miRNA, its length and number of reads (in RPM) in each library (A, B, C) are indicated. The column “Star” indicates when a corresponding miRNA* was found in the libraries.