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Table 1 Organ-specific changes of transcript abundance in response to cytokinin treatment

From: Transcript profiling of cytokinin action in Arabidopsis roots and shoots discovers largely similar but also organ-specific responses

Category

CATMA ID

AbB

Ratio

FVR p-value cytokinin effect

AGI

Description

   

Root

Shoot

   
   

BA15 vs. BA0

BA120 vs. BA0

BA1080 vs. BA0

BA15 vs. BA0

BA120 vs. BA0

BA1080 vs. BA0

   

root-specific

CATMA1a44090

9

5.71

75.18

156.88

0.74

0.47

0.52

1.81E-02

AT1G53060

legume lectin family protein

 

CATMA1a56420

8

4.19

60.47

29.56

0.90

0.62

1.50

4.72E-03

AT1G67110

cytochrome P450, putative

 

CATMA2a32630

11

1.68

0.26

66.01

1.61

0.55

0.83

3.02E-07

AT2G34490

cytochrome P450 family protein

 

CATMA4a38980

13

6.85

21.89

16.03

1.50

1.03

0.99

4.49E-03

AT4G37410

cytochrome P450, putative

 

CATMA3a15410

8

0.89

19.41

3.14

1.55

1.47

0.71

2.38E-03

AT3G15990

sulfate transporter, putative

 

CATMA1a29550

13

0.97

6.93

9.80

0.82

0.89

1.93

1.25E-04

AT1G31320

LOB domain protein 4 (LBD4)

 

CATMA5a61330

18

2.56

8.17

5.68

1.21

0.84

1.02

5.89E-04

AT5G65990

amino acid transporter family protein

 

CATMA4a30310

28

0.99

0.86

5.08

0.65

0.54

0.81

1.31E-06

AT4G28660

photosystem II reaction centre W (PsbW) family protein

 

CATMA5a50360

21

0.49

0.64

5.65

1.00

0.56

1.16

6.90E-06

AT5G54510

IAA-amido synthase

 

CATMA3a26362

30

0.93

0.51

4.73

0.98

0.69

1.53

1.35E-05

AT3G26570

phosphate transporter family protein

 

CATMA2a00475

24

1.15

1.12

3.41

0.62

0.61

0.55

1.67E-02

AT2G01420

auxin transport protein, putative

 

CATMA4a22880

19

0.86

0.45

2.71

0.66

0.46

0.54

2.32E-04

AT4G21280

PsbQ subunit of photosystem II.

 

CATMA4a33000

9

1.04

0.64

0.07

1.12

1.79

1.43

7.04E-04

AT4G31320

auxin-responsive protein, putative (SAUR_C)

 

CATMA4a20925

12

0.95

0.35

0.04

1.39

0.74

0.71

3.39E-04

AT4G19690

iron-responsive transporter (IRT1)

 

CATMA4a11410

6

0.82

0.24

0.08

0.93

1.14

0.97

1.09E-02

AT4G11280

1-aminocyclopropane-1-carboxylate (ACC) synthase

shoot-specific

CATMA5a49210

6

2.28

1.71

0.79

5.42

7.91

6.22

2.53E-05

AT5G53290

ERF subfamily B-5 of ERF/AP2 transcription factor

 

CATMA2a30720

12

0.82

2.11

0.71

5.49

6.48

7.33

7.58E-03

AT2G32430

galactosyltransferase family protein

 

CATMA5a51700

7

1.48

1.64

0.43

3.18

9.71

5.61

5.80E-03

AT5G55920

nucleolar protein, putative

 

CATMA3a41735

22

1.00

1.37

0.64

8.68

7.88

1.83

1.21E-01

AT3G48750

A-type cyclin-dependent kinase

 

CATMA4a19065

19

2.17

1.45

0.48

3.05

6.26

4.66

1.09E-02

AT4G18040

eukaryotic translation initiation factor 4E 1 (EIF4E1)

 

CATMA3a10615

6

0.72

1.35

0.61

2.91

5.89

3.86

2.37E-03

AT3G11670

digalactosyldiacylglycerol synthase 1 (DGD1)

 

CATMA1a28980

22

0.57

0.50

1.51

3.39

1.78

2.26

1.19E-02

AT1G30840

purine permease-related

 

CATMA2a32773

9

1.19

1.14

1.69

0.83

0.34

0.34

2.80E-02

AT2G34650

protein kinase PINOID (PID)

 

CATMA5a53690

31

0.85

0.63

1.80

0.53

0.45

0.39

8.23E-03

AT5G57930

ACCUMULATION OF PHOTOSYSTEM ONE 2 (APO2)

 

CATMA1a65110

29

1.04

0.79

0.54

0.34

0.32

0.09

3.96E-07

AT1G75820

CLAVATA1 receptor kinase (CLV1)

 

CATMA5a43215

30

0.50

0.80

0.87

0.44

0.18

0.08

3.27E-03

AT5G47230

ERF subfamily B-3 of ERF/AP2 transcription factor (ATERF-5)

 

CATMA4a28860

31

0.53

0.50

0.85

0.26

0.17

0.07

8.86E-05

AT4G27280

calcium-binding EF hand family protein

differential

CATMA4a13955

22

1.87

1.07

0.22

10.41

4.16

2.68

2.25E-04

AT4G13770

cytochrome P450 family protein

 

CATMA5a03540

10

0.71

2.78

5.07

0.44

0.18

0.50

1.01E-02

AT5G04330

cytochrome P450, putative

similar

CATMA5a07985

17

2.96

2.22

1.85

14.50

30.04

4.43

2.03E-02

AT5G08640

flavonol synthase 1 (FLS1)

 

CATMA3a18390

5

2.90

12.10

4.22

9.20

4.14

2.85

1.05E-03

AT3G18773

zinc finger (C3HC4-type RING finger) family protein

 

CATMA2b16180

13

2.72

12.21

8.03

2.92

2.72

2.64

7.70E-03

AT2G17500

auxin efflucarrier family protein

 

CATMA4a41340

17

2.58

2.26

3.97

5.32

4.92

10.72

1.08E-04

AT4G39950

cytochrome P450 79B2, putative (CYP79B2)

 

CATMA1a18090

15

3.90

12.44

0.83

1.90

6.88

1.54

4.74E-06

AT1G19050

response regulator 7 (ARR7)

 

CATMA2a16180

11

1.01

7.02

5.94

3.08

1.61

1.85

1.01E-02

AT2G17500

auxin efflucarrier family protein

 

CATMA4a25920

22

3.39

2.18

0.72

3.05

7.24

2.36

1.25E-04

AT4G24190

shepherd protein (SHD)

 

CATMA4a20920

12

1.07

1.57

3.05

1.03

4.11

7.38

1.47E-02

AT4G19680

iron-responsive transporter (IRT2)

 

CATMA5a46780

4

0.81

4.71

2.55

2.12

2.52

4.32

1.40E-02

AT5G50820

no apical meristem (NAM) family protein

 

CATMA5a19900

9

4.76

2.40

1.61

2.80

3.08

2.25

2.14E-02

AT5G22440

60S ribosomal protein L10A (RPL10aC)

 

CATMA2a29850

28

2.70

2.11

3.60

2.93

2.57

2.62

8.25E-03

AT2G31610

40S ribosomal protein S3 (RPS3A)

 

CATMA1a69100

20

3.03

2.52

2.38

2.11

4.75

1.72

1.99E-02

AT1G79920

heat shock protein 70, putative (HSP70)

 

CATMA5a43680

27

2.66

1.68

3.14

3.01

3.43

2.48

1.43E-02

AT5G47700

60S acidic ribosomal protein P1 (RPP1C)

 

CATMA4a31370

15

0.43

4.28

3.45

1.19

1.89

4.42

4.75E-05

AT4G29740

FAD-binding domain-containing protein

 

CATMA1a48985

6

0.84

3.57

4.63

2.27

1.03

3.28

2.86E-03

AT1G59940

response regulator (ARR)

 

CATMA3a45520

17

2.65

1.44

2.74

1.34

2.27

2.94

1.95E-02

AT3G52580

40S ribosomal protein S14 (RPS14C)

 

CATMA1a09860

13

2.25

1.17

3.18

3.46

1.96

0.54

7.61E-03

AT1G10970

metal transporter, putative (ZIP4)

 

CATMA3a48290

12

2.71

1.42

0.86

4.96

2.26

0.96

1.77E-02

AT3G55280

60S ribosomal protein L23A (RPL23aB)

 

CATMA2a26520

26

0.78

0.27

1.61

1.14

0.40

0.74

8.72E-05

AT2G28120

nodulin family protein

 

CATMA4a08040

24

0.80

0.58

0.31

1.74

1.08

0.23

1.41E-05

AT4G08290

nodulin MtN21 family protein

 

CATMA4a01650

8

1.07

1.03

0.17

1.13

0.81

0.39

9.55E-03

AT4G01450

nodulin MtN21 family protein

 

CATMA2a31475

31

0.29

0.82

1.51

0.39

0.46

0.59

3.36E-03

AT2G33310

indoleacetic acid-induced protein 13 (IAA13)

 

CATMA1a01400

10

0.62

0.84

0.26

1.12

0.36

0.27

2.11E-02

AT1G02400

gibberellin 2-oxidase

 

CATMA4a08050

23

0.52

0.30

0.27

1.10

0.83

0.16

9.93E-06

AT4G08300

nodulin MtN21 family protein

 

CATMA2a25030

24

0.56

0.39

0.56

0.64

0.64

0.34

4.80E-03

AT2G26710

cytochrome p450 family

 

CATMA1a18780

31

0.77

0.27

0.80

0.73

0.31

0.22

6.34E-05

AT1G19770

purine permease-related

 

CATMA3a22995

31

0.63

0.37

0.57

0.35

0.48

0.69

1.67E-02

AT3G23050

indoleacetic acid-induced protein 7 (IAA7)

 

CATMA5a59720

22

0.57

0.27

0.78

0.51

0.29

0.19

1.55E-04

AT5G64260

phosphate-responsive protein, putative

 

CATMA1a66768

9

1.01

0.46

0.24

0.62

0.20

0.06

8.11E-05

AT1G77640

DREB subfamily A-5 of ERF/AP2 transcription factor

 

CATMA1a33270

21

0.78

0.11

0.16

0.55

0.27

0.60

6.69E-05

AT1G35140

phosphate-responsive protein

 

CATMA3a25040

24

0.82

0.52

0.13

0.45

0.38

0.06

7.64E-07

AT3G25190

nodulin, putative

 

CATMA3a14910

27

0.51

0.30

0.60

0.49

0.22

0.14

2.37E-04

AT3G15500

no apical meristem (NAM) family protein (NAC3)

similar

CATMA5a57200

28

0.65

0.33

0.60

0.32

0.12

0.09

9.30E-05

AT5G61600

ERF subfamily B-3 of ERF/AP2 transcription factor

 

CATMA1a26550

17

0.71

0.19

0.09

0.69

0.22

0.12

1.61E-05

AT1G28370

ERF subfamily B-1 of ERF/AP2 transcription factor

 

CATMA3a14565

31

0.41

0.17

0.70

0.40

0.14

0.17

3.42E-04

AT3G15210

ERF subfamily B-1 of ERF/AP2 transcription factor (ATERF-4)

 

CATMA5a47120

23

0.65

0.30

0.33

0.43

0.11

0.08

2.60E-04

AT5G51190

ERF subfamily B-3 of ERF/AP2 transcription factor

 

CATMA5a43205

26

0.60

0.43

0.11

0.47

0.18

0.07

2.68E-06

AT5G47220

ERF subfamily B-3 of ERF/AP2 transcription factor

 

CATMA2a43300

20

0.42

0.64

0.21

0.36

0.15

0.05

5.73E-04

AT2G44840

ERF subfamily B-3 of ERF/AP2 transcription factor

 

CATMA3a54340

27

0.41

0.16

0.26

0.23

0.24

0.14

2.27E-03

AT3G61190

BON1-associated protein 1 (BAP1)

 

CATMA5a06800

26

0.85

0.44

0.40

0.90

0.68

0.34

1.93E-06

AT5G07580

ERF subfamily B-3 of ERF/AP2 transcription factor

uncategorized

CATMA2a39655

8

0.93

2.15

0.27

2.78

13.61

2.65

2.87E-02

AT2G41310

response regulator 3 (ARR3)

 

CATMA1a08395

15

0.58

0.52

1.31

0.32

0.37

0.39

1.12E-02

AT1G09530

phytochrome interacting factor 3 (PIF3)

 

CATMA2a37175

9

2.69

4.10

0.81

2.50

1.54

0.56

1.77E-02

AT2G38940

phosphate transporter (PT2)

 

CATMA1a68670

23

1.63

1.43

1.36

2.45

3.23

3.06

2.54E-02

AT1G79560

FtsH protease

 

CATMA5a43410

15

0.48

0.18

0.00

3.30

0.70

0.10

1.31E-06

AT5G47450

major intrinsic family protein

 

CATMA2a31585

30

1.06

0.59

3.55

0.60

0.50

1.29

3.99E-05

AT2G33430

plastid developmental protein DAG

 

CATMA2a34435

28

0.96

1.00

2.51

0.86

1.27

1.22

9.89E-05

AT2G36250

chloroplast division protein FtsZ (FtsZ2-1)

 

CATMA5a43410

15

0.48

0.18

0.00

3.30

0.70

0.10

1.31E-06

AT5G47450

major intrinsic family protein

  1. The table contains an arbitrary selection of genes showing an organ-specific change of transcript abundance in response to cytokinin treatment. A number of these genes are discussed in the text. The categorization of genes was performed as described in Methods and in Additional file 1: Figure S1. Expression ratios in roots and shoots at different time points in relation to the control are given and coded by different font variants: bold, upregulation; italics, downregulation; regular, no regulation. CATMA ID, unique identifier for the gene specific tag (probe) on the microarray (data can be queried under http://www.catma.org); AbB, number of spots above background (a rough measure for expression strength); AGI, unique gene identifier assigned by TAIR; Description, edited TAIR database annotation. FDR corrected p-values ≤ 0.03, indicating whether a gene was significantly regulated by cytokinin, are marked with bold numbers.
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BMC Plant Biology

ISSN: 1471-2229

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