Table 1 Overview of tag number
| Â | Â | No. of clean tag | No. (%) of Unambiguous mapped Tag | No. (%) of Unambiguous tag-matched unigene | No. (%) of unknown tag |
|---|---|---|---|---|---|
Time of hypocotyls cultured (h) | 0 | 3713673 | 1551964(41.79) | 13446(65.05) | 1994178(53.70) |
6 | 3574921 | 1361344(38.08) | 13513(65.37) | 2093782(58.57) | |
24 | 3421294 | 1393380(40.73) | 13781(66.67) | 1891802(55.29) | |
48 | 3433665 | 1239777(36.11) | 12595(60.93) | 1970515(57.39) | |
Noembryogenic calli | 3649041 | 1423394(39.01) | 12687(61.38) | 2013798(55.19) | |
Embryogenic calli | 3542887 | 1237924(34.94) | 12230(59.17) | 2185187(61.68) | |
Globular embryo | 3542767 | 1333449(37.64) | 12406(60.02) | 2113500(59.66) | |
Torpedo embryo | 3662505 | 1427168(38.97) | 12749(61.68) | 2134578(58.28) | |
Cotyledon embryo | 3567705 | 1258997(35.29) | 12649(61.19) | 2162331(60.61) | |
Average | 3567606 | 1358600(38.06) | 12895(62.38) | 2062186(57.82) | |