Table 2 Results compiled from cluster and SSR analysis of the 12 oil palm cDNA libraries
Steps of Analyses | Totals |
|---|---|
ESTs | 7376 |
Singletons | 4967 |
Contigs | 1136 |
Unigenes | 6103 |
SSRs found within unigene set | 465 |
EST-SSRs with similarities found by BLASTX at NCBI | 186 |
EST-SSRs similar to Unknown, predicted or hypothetical protein | 78 |
EST-SSRs with no similarities in NCBI databases | 201 |
GO biological process annotations | 163 |
GO molecular function annotations | 179 |
GO cellular component annotations | 196 |
EST-SSRs with annotations and possible primer pairs identified in flanking sequences | 316 |
EST-SSR primer pairs synthesized and tested for polymorphisms in a cross LM2TxDA10D | 289 |
EST-SSR primer pairs that amplified PCR product | 230 |