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Table 2 The genes identified in non-TE and nonrepeated sequences of BAC_2383A24.

From: The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats

Identified genes

Hypothetical function

Positions in 2383A24

Protein length, residues

Support level

2383A24.1

Conserved hypothetical, transferase domain containing

9737 to 11 026

429

Similar to rice Os04g0194400 (58% identity, 100% coverage) Os04g0175500 (58% identity, 99% coverage EST support: +

2383A24.2

Putative decarboxylase protein

14 749 to 16 257

502

Similar to rice Os08g0140300 (79% identity, 100% coverage), to barley BAD11769.1 tryptophan decarboxylase (80% identity, 100% coverage) EST support: +

2383A24.3

Conserved hypothetical, transferase domain containing

19 745 to 21 019

424

Similar to rice Os04g0194400 (59% identity, 100% coverage) Os04g0175500 (59% identity, 99% coverage) EST support: +

2383A24.4

Unknown

26 839 to 27 333

164

Similar to rice Os01g0121600 (57% identity, 83% coverage) EST support: +

2383A24.5

Unknown

33 063 to 33 407

114

Similar to rice Os01g0121600 (73% identity, 88% coverage) EST support: +