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Table 1 The elements identified in the T. aestivu m BAC clone 2383A24 (length, 113 605 bp).

From: The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats

Class, order, superfamily, family

Copy number

Sequence length, bp

Fraction in complete BAC_2383A24 sequence, %

Class I elements (Retrotransposons)

11

58 604

51.6

LTR retrotransposons

10

57 590

50.7

gypsy

6

31708

27.9

RLG_Egug_2383A24_solo_LTR

1

1503

 

RLG_Wilma_2383A24_solo_LTR

1

1490

 

RLG_Sabrina_2383A24-1p

1

1505

 

RLG_Fatima_2383A24-1p, -2, and -3

3

27 210

 

copia

3

24 316

21.4

RLC_WIS_2383A24-1

1

8353

 

RLC_Barbara_2383A24-1p

1

6384

 

RLC_Claudia_2383A24-1p

1

9579

 

Unknown LTR retrotransposons RLX_Xalax_2383A24-1p

1

1566

1.4

Non-LTR retrotransposons LINE, RIX_2383A24-1p

1

1014

0.9

Class II elements (DNA transposons)CACTA, DTC_Caspar_2383A24-1p

1

3693

3.3

MITE

6

747

0.7

Other known repeatsSpelt1 tandem repeats

6

1010

0.9

Genes

5

4913

4.3

Unassigned sequences

  

39.2

  1. The copy number, total sequence length, and its percent content in the complete BAC_2383A24 sequence are shown for genes, the Spelt1 tandem repeat, and each TE class, order and superfamily.