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Table 1 The elements identified in the T. aestivu m BAC clone 2383A24 (length, 113 605 bp).

From: The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats

Class, order, superfamily, family Copy number Sequence length, bp Fraction in complete BAC_2383A24 sequence, %
Class I elements (Retrotransposons) 11 58 604 51.6
LTR retrotransposons 10 57 590 50.7
gypsy 6 31708 27.9
RLG_Egug_2383A24_solo_LTR 1 1503  
RLG_Wilma_2383A24_solo_LTR 1 1490  
RLG_Sabrina_2383A24-1p 1 1505  
RLG_Fatima_2383A24-1p, -2, and -3 3 27 210  
copia 3 24 316 21.4
RLC_WIS_2383A24-1 1 8353  
RLC_Barbara_2383A24-1p 1 6384  
RLC_Claudia_2383A24-1p 1 9579  
Unknown LTR retrotransposons RLX_Xalax_2383A24-1p 1 1566 1.4
Non-LTR retrotransposons LINE, RIX_2383A24-1p 1 1014 0.9
Class II elements (DNA transposons)CACTA, DTC_Caspar_2383A24-1p 1 3693 3.3
MITE 6 747 0.7
Other known repeatsSpelt1 tandem repeats 6 1010 0.9
Genes 5 4913 4.3
Unassigned sequences    39.2
  1. The copy number, total sequence length, and its percent content in the complete BAC_2383A24 sequence are shown for genes, the Spelt1 tandem repeat, and each TE class, order and superfamily.
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BMC Plant Biology

ISSN: 1471-2229

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