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Figure 3 | BMC Plant Biology

Figure 3

From: The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats

Figure 3

The comparison of "autonomous" and "nonautonomous" variants of Fatima. The "autonomous" variant TREP3189 presented by the consensus nucleotide sequence, with the two open reading frames corresponding to hypothetical proteins PTREP233 (polyprotein) and PTREP234. The "nonautonomous" variant TREP3198 presented by the consensus nucleotide sequence, with the open reading frames corresponding to hypothetical proteins PTREP231 (polyprotein) and PTREP232. The conservative domains are indicated as follows: AP - aspartic proteinase, RT - reverse transcriptase, RH - RNAse H, INT - integrase, and gag - structural core protein. The conserved regions between "autonomous" and "nonautonomous" variants are indicated with light grey shading and the percent of homology is defined. Likewise the relative position of probe BAC2383A24/15 in reference to "autonomous" Fatima variant is marked with light grey; in "nonautonomous" variant, the sequence corresponding to BAC2383A24/15 is absent.

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