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Table 1 Genes up-regulated by CPT-induced DNA damage.

From: Transcriptomic and proteomic profiling of maize embryos exposed to camptothecin

GO Definition GB# (EST)
UniGene ID
Probe Set ID log2(R) FDR p-value Fisher p-value ANOVA Arab.ortholog gene AGI code (BLAST core)
Cell growth & division
  Mob1-like protein/cell cycle checkpoint regulation BM334263
Zm.87024
Zm.15219.2.A1_a_at 1.8880 0.0189 0.0000 <0.001 At5g45550 (1e-100)
Cell structure
  Putative hydroxyproline-rich glycoprotein BM073956
Zm.1956
Zm.1956.1.S1_at 3.0867 0.0486 0.0004 0.003 At1g63830 (5e-87)
  Vegetative cell wall protein gp1 precursor BM075217
Zm.2556
Zm.2556.1.A1_at 2.3581 0.0483 0.0004 0.003 At5g09530 (4e-55)
Defense and stress responses
  Nucleoredoxin1/PDI-like protein U90944
Zm.75215
Zm.411.1.A1_at 3.3395 0.0190 0.0000 <0.001 At1g60420 (0.0)
  Class III peroxidase precursor BG874182
Zm.3932
Zm.14563.1.A1_s_at 2.8933 0.0411 0.0002 0.002 At1g68850 (1e-85)
  Acidic classI chitinase L00973
Zm.93771
Zm.847.1.S1_at 2.5319 0.0190 0.0000 0.001 At3g12500 (7e-85)
  NEP1-interacting protein BE051646
Zm.1499
Zm.1499.2.S1_a_at 2.0058 0.0190 0.0000 <0.001 At3g05880 (1e-19)
  Glutathione S-transferase GST 41 AF244706
Zm.81286
Zm.566.1.S1_at 1.3591 0.0486 0.0004 0.002 At3g09270 (7e-47)
  Glutathione S-transferase GST 36 AF244701
Zm.561
Zm.561.1.A1_at 1.0026 0.0486 0.0004 0.002 At3g09270 (1e-51)
DNA replication, recombination and repair
  Ribonucleoside-diphosphate reductase small chain AY105596
Zm.6802
Zm.14324.3.A1_x_at 2.6765 0.0425 0.0003 0.002 At3g27060 (1e-153)
  Ribonucleotide reductase R1 (large subunit) BM079174
Zm.94425
Zm.5173.1.A1_at 2.4371 0.0205 0.0001 0.001 At2g21790 (1e-114)
  ZmRAD51B (AtRAD51) AF079429
Zm.632
Zm.632.1.S1_at 1.7976 0.0271 0.0001 0.001 At5g20850 (1e-166)
  Putative DNA repair protein rhp16 AI665143
Zm.24329
ZmAffx.68.1.A1_at 1.6612 0.0041 0.0000 <0.001 At1g05120 (9e-73)
  Replication protein A2 AI691259
Zm.3800
Zm.3800.1.S1_at 1.5970 0.0189 0.0000 <0.001 At3g02920 (1e-44)
  Acetyltransferase, GNAT family protein BM267811
Zm.9765
Zm.10129.1.A1_at 1.5045 0.0433 0.0003 0.002 At2g32030 (9e-47)
  Putative X-ray induced gene 1 (XRI-1) AY108750
Zm.6271
Zm.6271.2.S1_a_at 1,.2268 0.0190 0.0000 <0.001 At5g48720 (7e-32)
Energy
  NADH dehydrogenase I subunit N AY108360
Zm.9290
Zm.9290.1.A1_at 1.5489 0.0483 0.0004 0.002 At5g58260 (1e-73)
  SC3 protein/Secretory carrier-associated membrane protein CK826632
Zm.2391
Zm.2391.1.A1_at 1.3676 0.0282 0.0001 0.001 At1g61250 (1e-109)
Metabolism
  Plastid ADP-glucose pyro-phosphorylase large subunit BM379502
Zm.84929
Zm.12201.1.A1_at 2.7181 0.0486 0.0004 0.003 At5g19220 (0.0)
  Glucosyltransferase CN844543
Zm.16431
Zm.16431.1.S1_at 1.4698 0.0483 0.0004 0.002 At3g16520 (3e-88)
Protein processing
  Purple acid phosphatase 1 CF041723
Zm.3526
Zm.3526.1.S1_at 2.6090 0.0486 0.0004 0.003 At1g14700 (1e-117)
  Putative Tat binding prot.1 (TBP-1)-interact.prot.(TBPIP) CA827618
Zm.13315
Zm.13315.1.S1_at 2.1725 0.0231 0.0001 0.001 At1g13330 (5e-65)
  PI31 Proteasome inhibitor-like protein BM078279
Zm.6974
Zm.6974.1.A1_at 1.2613 0.0250 0.0001 0.001 At3g53970 (3e-37)
Signal transduction andgene expression
  NAC domain-containing protein 77 BM379544
Zm.4179
Zm.4179.1.A1_at 2.3089 0.0098 0.0000 <0.001 At5g18270 (3e-61)
  NAC domain-containing protein 21/22 BM381180
Zm.76113
Zm.11843.1.A1_at 2.2599 0.0250 0.0001 0.001 At3g04060 (4e-21)
  Putative Rop family GTPase, ROP7 (AtROP9) AY104576
Zm.14010
Zm.1279.1.S1_at 1.1436 0.0483 0.0004 0.002 At4g28950 (1e-100)
Transposons
  Transposon protein Pong subclass BM073216
Zm.2207
Zm.2207.1.A1_at 3.4310 0.0098 0.0000 <0.001 At2g13770 (2e-29)
Unknown
  Unknown protein CF637079
Zm.84375
Zm.3785.1.S1_at 4.4767 0.0041 0.0000 <0.001 At1g29640 (6e-13)
  Unknown protein BM078256
Zm.84635
Zm.4210.1.S1_at 3.3151 0.0292 0.0001 0.001 At3g47070 (2e-06)
  Leucine-rich repeat, cysteine-containing protein CK370970
Zm.98655
Zm.17789.1.A1_at 3.0884 0.0098 0.0000 <0.001 At2g06040 (4e-40)
  Unknown protein CF974775
Zm.17071
Zm.17071.1.S1_at 2.5487 0.0143 0.0000 <0.001 At5g02220 (0.0)
  Unknown protein BG840178
Zm.3570
Zm.3570.1.A1_at 2.0342 0.0141 0.0000 <0.001 At5g39530 (6e-08)
  Unknown protein BM073017
Zm.2445
Zm.2445.1.A1_at 1.6888 0.0223 0.0001 0.001 Nd
  Histidine kinase-like ATPase superfamily BQ485400
Zm.10451
Zm.10451.1.S1_at 1.5810 0.0189 0.0000 <0.001 At1g19100 (4e-04)
  Unknown protein CO521239
Zm.19124
Zm.19124.1.A1_at 1.3036 0.0189 0.0000 <0.001 At5g35320 (2e-14)
  Unknown protein AY106977
Zm.82291
Zm.2968.1.A1_at 1.2993 0.0483 0.0004 0.002 Nd
  Unknown protein BG841197
Zm.61674
Zm.2192.1.A1_at 1.1864 0.0189 0.0000 <0.001 Nd
  Unknown protein BQ538249
Zm.10551
Zm.10551.1.A1_at 1.0488 0.0438 0.0003 0.002 At1g31720 (6e-23)
  AAA-type ATPase/ATPase2 CK826796
Zm.94919
Zm.16211.1.S1_at 3.2748 0.0189 0.0000 <0.001 At3g28540 (0.0)
  1. GB#, maize EST accession number in GenBank database. UniGene ID code; Probe set ID in Affymetrix chip; Affymetrix chip hybridization parameters: R ≥ 2.0 and false discovery rate (FDR) ≤ 0.05.