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Figure 3 | BMC Plant Biology

Figure 3

From: Prospecting for Genes involved in transcriptional regulation of plant defenses, a bioinformatics approach

Figure 3

Pearson correlation coefficient cutoff determination and co-expression network. (A) Graph of the number of nodes with at least one link for each PCC cutoff. (B) Graph of the number of edges between nodes for each PCC cutoff. (C) Graph of the network density for each PCC cutoff. (D) Graph of the total number of clusters determined with the MCODE algorithm for each PCC cutoff. (E) Visualization using Cytoscape of the co-expression network. Blue-dots, on microarray spotted selection of >1400 transcription factors and JAZ proteins; other colored dots represent similarly colored genes from Figure 2.

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BMC Plant Biology

ISSN: 1471-2229

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