Skip to main content

Table 1 Numbers of significantly enriched categories in GSEA

From: Transcriptome analysis by GeneTrail revealed regulation of functional categories in response to alterations of iron homeostasis in Arabidopsis thaliana

General biochemical and cellular categories from KEGG, GO, TRANSPATH and TRANSFAC
  Roots Leaves
Comparisons induced repressed induced repressed
WT - Fe vs. + Fe 9 (4) 17 (11) 26 (15) 18 (11) 13 (4) 31 (15)
nas4x-1 - Fe vs. + Fe 5 (3) 3 (2) 8 (5) 10 (8) 2 (2) 12 (10)
+ Fe nas4x-1 vs. WT 16 (5) 5 (3) 21 (8) 3 (3) 2 (2) 5 (5)
- Fe nas4x-1 vs. WT 5 (2) - 5 (2) 11 (6) 3 (2) 14 (8)
MapMan categories
  Roots Leaves
Comparisons induced repressed induced repressed
WT - Fe vs. + Fe 5 1 6 1 - 1
nas4x-1 - Fe vs. + Fe 3 1 4 4 1 5
+ Fe nas4x-1 vs. WT 3 2 5 4 2 6
- Fe nas4x-1 vs. WT 4 - 4 3 4 7
  1. The numbers were obtained by counting induced and repressed categories of Table S1 and Table S2. In brackets are the numbers of areas into which the corresponding enriched categories were grouped.