| |
Percentage of transcripts classified in co-expression profiles in Figure 2.
|
|---|
|
Functional Categories
|
High to low
|
Low to high
|
PMA, MA, SCP, TPA
|
PMA, MA, SCP
|
MA
|
SCP
|
TPA
| |
|---|
| |
1
|
2
|
3
|
4
|
5
|
6
|
7
|
8
|
9
|
10
|
Total
|
|---|
|
Amino acid metabolism
|
0.6
|
1.6
|
1.1
|
1.4
|
1.8
|
0.8
|
1.1
|
0.3
|
0.2
|
0.6
|
1.2
|
|
Carbohydrate metabolism
|
0.8
|
2.0
|
1.2
|
4.4
|
1.4
|
3.4
|
2.5
|
1.1
|
1.4
|
1.6
|
2.0
|
|
Catalytic activity
|
1.7
|
2.7
|
2.4
|
4.8
|
3.8
|
6.8
|
5.7
|
4.0
|
3.0
|
3.9
|
3.5
|
|
Cell cycle
|
2.3
|
3.3
|
6.1
|
2.1
|
2.3
|
1.2
|
1.2
|
1.6
|
0.7
|
1.3
|
3.0
|
|
Cell structure
|
1.7
|
2.0
|
3.0
|
1.7
|
1.4
|
2.4
|
2.6
|
2.2
|
2.5
|
5.4
|
2.5
|
|
Chromatin remodeling
|
1.7
|
2.7
|
2.5
|
1.3
|
1.0
|
1.0
|
0.7
|
0.5
|
0.4
|
0.6
|
1.7
|
|
Energy metabolism
|
1.5
|
3.6
|
1.6
|
4.7
|
1.8
|
3.4
|
3.0
|
2.7
|
2.5
|
1.3
|
2.7
|
|
Lipid metabolism
|
1.1
|
2.2
|
2.5
|
3.6
|
3.0
|
6.6
|
4.4
|
3.0
|
4.6
|
2.6
|
2.9
|
|
Nucleotide metabolism
|
0.6
|
1.3
|
1.6
|
1.5
|
1.1
|
0.0
|
0.7
|
0.0
|
0.7
|
0.4
|
1.1
|
|
Protein-protein interaction
|
2.3
|
3.3
|
2.7
|
4.4
|
2.3
|
2.8
|
2.6
|
2.7
|
4.0
|
2.1
|
3.0
|
|
Protein metabolism
|
5.7
|
7.9
|
6.3
|
6.8
|
7.3
|
4.4
|
6.3
|
8.9
|
11.6
|
4.0
|
6.9
|
|
RNA metabolism
|
7.7
|
7.5
|
7.4
|
2.2
|
3.8
|
1.2
|
1.9
|
1.1
|
1.4
|
1.0
|
4.8
|
|
Secondary metabolism
|
1.8
|
0.6
|
0.9
|
0.9
|
1.2
|
3.8
|
4.0
|
3.2
|
5.3
|
2.7
|
1.7
|
|
Signal transduction
|
6.6
|
7.5
|
8.8
|
9.0
|
8.2
|
7.8
|
9.3
|
7.8
|
6.8
|
10.5
|
8.3
|
|
Stress
|
4.4
|
3.1
|
3.0
|
3.5
|
3.7
|
6.6
|
6.5
|
4.0
|
5.1
|
4.6
|
3.8
|
|
Transcription factors
|
8.9
|
8.0
|
7.7
|
5.3
|
5.1
|
7.0
|
7.6
|
8.9
|
6.1
|
5.7
|
7.1
|
|
Translation
|
1.1
|
8.8
|
2.8
|
1.5
|
1.3
|
0.2
|
1.0
|
0.0
|
0.7
|
0.2
|
3.4
|
|
Transporters
|
2.3
|
4.1
|
3.5
|
4.8
|
5.5
|
7.8
|
4.4
|
4.0
|
5.4
|
6.2
|
4.5
|
|
Vesicular trafficking
|
0.3
|
2.9
|
1.0
|
5.0
|
2.4
|
2.6
|
0.7
|
0.0
|
0.4
|
2.2
|
2.1
|
|
Others
|
46.9
|
25.1
|
33.9
|
31.1
|
41.3
|
30.5
|
34.0
|
44.1
|
37.5
|
43.1
|
33.8
|
|
Genes in each cluster
|
652
|
3124
|
2439
|
1383
|
1068
|
502
|
733
|
372
|
571
|
1071
|
11915
|
- The total representation of genes (% values) of three major functional categories (besides 'Others') is shown in bold & underlined text. Over-representation of genes in each functional category by more than 20% of their overall representation in individual clusters is highlighted with bold and italicized letters.
