Table 2 Transcriptional profiles of genes in Norton berry skin that are associated with secondary metabolism
ClusterA | Affymetrix ChipID | Genoscope ID | Function (VitisNet)B | KEGG | Pathway (VitisNet) |
|---|---|---|---|---|---|
1 | VVTU703_s_at | GSVIVT00018175001 | Phenylalanine ammonia lyase 2 (PAL2) | 4.3.1.5 | Phenylpropanoid |
1 | VVTU12705_s_at | GSVIVT00024561001 | Phenylalanine ammonia lyase (PAL) | 4.3.1.5 | Phenylpropanoid |
18 | VVTU26285_at | GSVIVT00013936001 | Phenylalanine ammonia lyase (PAL) | 4.3.1.5 | Phenylpropanoid |
4 | VVTU39693_at | GSVIVT00008924001 | Cinnamyl alcohol dehydrogenase (CAD) | 1.1.1.195 | Phenylpropanoid |
6 | VVTU2766_at | GSVIVT00011484001 | Sinapyl alcohol dehydrogenase (SAD) | 1.1.1.195 | Phenylpropanoid |
10 | VVTU14855_at | GSVIVT00024588001 | Cinnamyl alcohol dehydrogenase (CAD) | 1.1.1.195 | Phenylpropanoid |
20 | VVTU21888_at | GSVIVT00011639001 | Cinnamyl alcohol dehydrogenase (CAD) | 1.1.1.195 | Phenylpropanoid |
2 | VVTU13147_s_at | GSVIVT00013987001 | Cinnamoyl-CoA reductase (CCR) | 1.2.1.44 | Phenylpropanoid |
7 | VVTU12930_s_at | GSVIVT00033763001 | Cinnamoyl-CoA reductase (CCR) | 1.2.1.44 | Phenylpropanoid |
12 | VVTU3517_at | GSVIVT00015738001 | Cinnamoyl-CoA reductase (CCR) | 1.2.1.44 | Phenylpropanoid |
13 | VVTU914_at | GSVIVT00038153001 | Cinnamoyl-CoA reductase (CCR) | 1.2.1.44 | Phenylpropanoid |
20 | VVTU15680_at | GSVIVT00020726001 | Cinnamoyl-CoA reductase (CCR) | 1.2.1.44 | Phenylpropanoid |
13 | VVTU4884_at | GSVIVT00002825001 | Caffeoyl-CoA O-methyltransferase (CCoAOMT) | 2.1.1.104 | Phenylpropanoid |
18 | VVTU36108_at | GSVIVT00025990001 | Caffeic acid O-methyltransferase (CAOMT) | 2.1.1.68 | Phenylpropanoid |
18 | VVTU6966_s_at | GSVIVT00026179001 | Caffeate 3-O-methyltransferase 1 (COMT) | 2.1.1.68 | Phenylpropanoid |
12 | VVTU34546_at | GSVIVT00009234001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
18 | VVTU34913_at | GSVIVT00007353001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
18 | VVTU34551_x_at | GSVIVT00031875001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
18 | VVTU11765_at | GSVIVT00004049001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
18 | VVTU7619_x_at | GSVIVT00005196001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
18 | VVTU2775_x_at | GSVIVT00007358001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
18 | VVTU18886_x_at | GSVIVT00007364001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
18 | VVTU6035_x_at | GSVIVT00009221001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
20 | VVTU26310_s_at | GSVIVT00031885001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
20 | VVTU2671_at | GSVIVT00009225001 | Stilbene synthase (STS) | 2.3.1.95 | Phenylpropanoid |
7 | VVTU15752_at | GSVIVT00002505001 | Pinoresinol forming dirigent protein | DIRPR | Phenylpropanoid |
16 | VVTU8264_at | GSVIVT00023306001 | p-Coumaroyl shikimate 3'-hydroxylase isoform 1 | K09754 | Phenylpropanoid |
14 | VVTU25372_at | GSVIVT00017649001 | Ferulate 5-hydroxylase (F5H) | K09755 | Phenylpropanoid |
18 | VVTU8974_at | GSVIVT00036840001 | Ferulate 5-hydroxylase (F5H) | K09755 | Phenylpropanoid |
14 | VVTU34012_at | GSVIVT00017653001 | Ferulate 5-hydroxylase (F5H) | K09755 | Phenylpropanoid |
2 | VVTU6513_s_at | GSVIVT00038750001 | Pinoresinol-lariciresinol reductase | PLR | Phenylpropanoid |
15 | VVTU15529_s_at | GSVIVT00021542001 | Secoisolariciresinol dehydrogenase | SIRD | Phenylpropanoid |
20 | VVTU2645_at | GSVIVT00031383001 | 4-Coumarate-CoA ligase 2 (4CL) | 6.2.1.12 | Phenylpropanoid |
1 | VVTU17924_s_at* | GSVIVT00014584001 | Dihydroflavonol 4-reductase (DFR) | 1.1.1.219 | Flavonoid |
12 | VVTU14294_at | GSVIVT00036313001 | Dihydroflavonol-4-reductase (DFR) | 1.1.1.219 | Flavonoid |
13 | VVTU36178_s_at* | GSVIVT00001063001 | Leucoanthocyanidin dioxgenase (LDOX) | 1.14.11.19 | Flavonoid |
11 | VVTU9714_at | GSVIVT00007249001 | Flavonol synthase (FLS) | 1.14.11.23 | Flavonoid |
13 | VVTU33390_s_at | GSVIVT00031249001 | Flavonol synthase (FLS) | 1.14.11.23 | Flavonoid |
14 | VVTU13981_at | GSVIVT00007247001 | Flavonol synthase (FLS) | 1.14.11.23 | Flavonoid |
18 | VVTU2456_s_at | GSVIVT00015347001 | Flavonol synthase (FLS) | 1.14.11.23 | Flavonoid |
10 | VVTU16387_at | GSVIVT00015842001 | Naringenin,2-oxoglutarate 3-dioxygenase | 1.14.11.9 | Flavonoid |
13 | VVTU39787_s_at | GSVIVT00036784001 | Flavanone 3-hydroxylase (F3H) | 1.14.11.9 | Flavonoid |
13 | VVTU37475_at | GSVIVT00037165001 | Flavanone 3-hydroxylase (F3H) | 1.14.11.9 | Flavonoid |
1 | VVTU7778_at | GSVIVT00034070001 | Flavonoid 3-monooxygenase | 1.14.13.21 | Flavonoid |
4 | VVTU6932_at | GSVIVT00016437001 | Flavonoid 3-monooxygenase | 1.14.13.21 | Flavonoid |
4 | VVTU25410_s_at | GSVIVT00036466001 | Flavonoid 3-monooxygenase | 1.14.13.21 | Flavonoid |
7 | VVTU6362_at | GSVIVT00017654001 | Flavonoid 3-monooxygenase | 1.14.13.21 | Flavonoid |
13 | VVTU35884_at | GSVIVT00022300001 | Flavonoid 3',5'-hydroxylase (F3'5'H) | 1.14.13.88 | Flavonoid |
10 | VVTU13083_at* | GSVIVT00005344001 | Anthocyanidin reductase (ANR) | 1.3.1.77 | Flavonoid |
13 | VVTU9453_at | GSVIVT00000479001 | Quercetin 3-O-methyltransferase 1 | 2.1.1.76 | Flavonoid |
1 | VVTU39820_s_at | GSVIVT00037967001 | Chalcone synthase(CHS) | 2.3.1.74 | Flavonoid |
5 | VVTU15193_at | GSVIVT00003466001 | UDP-glucose:flavonoid 7-O-glucosyltransferase (UFGT) | 2.4.1.237 | Flavonoid |
14 | VVTU22370_at | GSVIVT00033493001 | UDP-glucose:flavonoid 7-O-glucosyltransferase (UFGT) | 2.4.1.237 | Flavonoid |
13 | VVTU17578_s_at* | GSVIVT00014047001 | UDP-glucose:flavonoid 3-O-glucosyltransferase (UFGT) | 2.4.1.91 | Flavonoid |
3 | VVTU15110_at | GSVIVT00001621001 | Flavonol 3-sulfotransferase | 2.8.2.25 | Flavonoid |
1 | VVTU3684_s_at | GSVIVT00029440001 | Chalcone flavanone isomerase (CHI) | 5.5.1.6 | Flavonoid |
17 | VVTU563_at | GSVIVT00020652001 | Chalcone isomerase (CHI) | 5.5.1.6 | Flavonoid |
10 | VVTU9073_x_at | GSVIVT00009968001 | UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase | 2.4.1.238 | Flavonoid |
12 | VVTU24324_at | GSVIVT00024127001 | Anthocyanidin 3-O-glucosyltransferase | 2.4.1.115 | Anthocyanin |
18 | VVTU35521_at | GSVIVT00024993001 | Anthocyanidin 3-O-glucosyltransferase | 2.4.1.115 | Anthocyanin |
19 | VVTU15768_at | GSVIVT00037558001 | Anthocyanidin 3-O-glucosyltransferase | 2.4.1.115 | Anthocyanin |
20 | VVTU14014_at | GSVIVT00005849001 | Anthocyanidin 3-O-glucosyltransferase | 2.4.1.115 | Anthocyanin |
7 | VVTU8698_at | GSVIVT00008206001 | Anthocyanidin rhamnosyl-transferase | RHATR | Anthocyanin |
8 | VVTU10613_at | GSVIVT00026922001 | Anthocyanidin rhamnosyl-transferase | RHATR | Anthocyanin |
13 | VVTU7774_at | GSVIVT00011809001 | UDP-rhamnose/rhamnosyltransferase | RHATR | Anthocyanin |
5 | VVTU8944_x_at | GSVIVT00001860001 | UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase | RHGT1 | Anthocyanin |
12 | VVTU14620_at | GSVIVT00001853001 | UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase | RHGT1 | Anthocyanin |
16 | VVTU15845_at | GSVIVT00001851001 | UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase | RHGT1 | Anthocyanin |
17 | VVTU15902_at | GSVIVT00001859001 | UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase | RHGT1 | Anthocyanin |
18 | VVTU36907_at | GSVIVT00024130001 | UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase | RHGT1 | Anthocyanin |
3 | VVTU5076_s_at | GSVIVT00033502001 | UDP-glucoronosyl/UDP-glucosyl transferase UGT75C1 | UGT75C1 | Anthocyanin |
15 | VVTU38572_at | GSVIVT00025511001 | CYP93A1 2-hydroxyisoflavanone synthase | 1.14.13.86 | Isoflavonoid |
13 | VVTU2075_at | GSVIVT00019588001 | CYP81E1 Isoflavone 2'-hydroxylase | 1.14.13.89 | Isoflavonoid |
20 | VVTU22627_at | GSVIVT00019595001 | CYP81E1 Isoflavone 2'-hydroxylase | 1.14.13.89 | Isoflavonoid |
4 | VVTU3973_at | GSVIVT00026339001 | 2'-hydroxy isoflavone/dihydroflavonol reductase | 1.3.1.45 | Isoflavonoid |
8 | VVTU6973_at | GSVIVT00003030001 | Isoflavone methyltransferase | 2.1.1.46 | Isoflavonoid |