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Table 2 Transcriptional profiles of genes in Norton berry skin that are associated with secondary metabolism

From: Berry skin development in Norton grape: Distinct patterns of transcriptional regulation and flavonoid biosynthesis

ClusterA Affymetrix ChipID Genoscope ID Function (VitisNet)B KEGG Pathway (VitisNet)
1 VVTU703_s_at GSVIVT00018175001 Phenylalanine ammonia lyase 2 (PAL2) 4.3.1.5 Phenylpropanoid
1 VVTU12705_s_at GSVIVT00024561001 Phenylalanine ammonia lyase (PAL) 4.3.1.5 Phenylpropanoid
18 VVTU26285_at GSVIVT00013936001 Phenylalanine ammonia lyase (PAL) 4.3.1.5 Phenylpropanoid
4 VVTU39693_at GSVIVT00008924001 Cinnamyl alcohol dehydrogenase (CAD) 1.1.1.195 Phenylpropanoid
6 VVTU2766_at GSVIVT00011484001 Sinapyl alcohol dehydrogenase (SAD) 1.1.1.195 Phenylpropanoid
10 VVTU14855_at GSVIVT00024588001 Cinnamyl alcohol dehydrogenase (CAD) 1.1.1.195 Phenylpropanoid
20 VVTU21888_at GSVIVT00011639001 Cinnamyl alcohol dehydrogenase (CAD) 1.1.1.195 Phenylpropanoid
2 VVTU13147_s_at GSVIVT00013987001 Cinnamoyl-CoA reductase (CCR) 1.2.1.44 Phenylpropanoid
7 VVTU12930_s_at GSVIVT00033763001 Cinnamoyl-CoA reductase (CCR) 1.2.1.44 Phenylpropanoid
12 VVTU3517_at GSVIVT00015738001 Cinnamoyl-CoA reductase (CCR) 1.2.1.44 Phenylpropanoid
13 VVTU914_at GSVIVT00038153001 Cinnamoyl-CoA reductase (CCR) 1.2.1.44 Phenylpropanoid
20 VVTU15680_at GSVIVT00020726001 Cinnamoyl-CoA reductase (CCR) 1.2.1.44 Phenylpropanoid
13 VVTU4884_at GSVIVT00002825001 Caffeoyl-CoA O-methyltransferase (CCoAOMT) 2.1.1.104 Phenylpropanoid
18 VVTU36108_at GSVIVT00025990001 Caffeic acid O-methyltransferase (CAOMT) 2.1.1.68 Phenylpropanoid
18 VVTU6966_s_at GSVIVT00026179001 Caffeate 3-O-methyltransferase 1 (COMT) 2.1.1.68 Phenylpropanoid
12 VVTU34546_at GSVIVT00009234001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
18 VVTU34913_at GSVIVT00007353001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
18 VVTU34551_x_at GSVIVT00031875001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
18 VVTU11765_at GSVIVT00004049001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
18 VVTU7619_x_at GSVIVT00005196001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
18 VVTU2775_x_at GSVIVT00007358001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
18 VVTU18886_x_at GSVIVT00007364001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
18 VVTU6035_x_at GSVIVT00009221001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
20 VVTU26310_s_at GSVIVT00031885001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
20 VVTU2671_at GSVIVT00009225001 Stilbene synthase (STS) 2.3.1.95 Phenylpropanoid
7 VVTU15752_at GSVIVT00002505001 Pinoresinol forming dirigent protein DIRPR Phenylpropanoid
16 VVTU8264_at GSVIVT00023306001 p-Coumaroyl shikimate 3'-hydroxylase isoform 1 K09754 Phenylpropanoid
14 VVTU25372_at GSVIVT00017649001 Ferulate 5-hydroxylase (F5H) K09755 Phenylpropanoid
18 VVTU8974_at GSVIVT00036840001 Ferulate 5-hydroxylase (F5H) K09755 Phenylpropanoid
14 VVTU34012_at GSVIVT00017653001 Ferulate 5-hydroxylase (F5H) K09755 Phenylpropanoid
2 VVTU6513_s_at GSVIVT00038750001 Pinoresinol-lariciresinol reductase PLR Phenylpropanoid
15 VVTU15529_s_at GSVIVT00021542001 Secoisolariciresinol dehydrogenase SIRD Phenylpropanoid
20 VVTU2645_at GSVIVT00031383001 4-Coumarate-CoA ligase 2 (4CL) 6.2.1.12 Phenylpropanoid
1 VVTU17924_s_at* GSVIVT00014584001 Dihydroflavonol 4-reductase (DFR) 1.1.1.219 Flavonoid
12 VVTU14294_at GSVIVT00036313001 Dihydroflavonol-4-reductase (DFR) 1.1.1.219 Flavonoid
13 VVTU36178_s_at* GSVIVT00001063001 Leucoanthocyanidin dioxgenase (LDOX) 1.14.11.19 Flavonoid
11 VVTU9714_at GSVIVT00007249001 Flavonol synthase (FLS) 1.14.11.23 Flavonoid
13 VVTU33390_s_at GSVIVT00031249001 Flavonol synthase (FLS) 1.14.11.23 Flavonoid
14 VVTU13981_at GSVIVT00007247001 Flavonol synthase (FLS) 1.14.11.23 Flavonoid
18 VVTU2456_s_at GSVIVT00015347001 Flavonol synthase (FLS) 1.14.11.23 Flavonoid
10 VVTU16387_at GSVIVT00015842001 Naringenin,2-oxoglutarate 3-dioxygenase 1.14.11.9 Flavonoid
13 VVTU39787_s_at GSVIVT00036784001 Flavanone 3-hydroxylase (F3H) 1.14.11.9 Flavonoid
13 VVTU37475_at GSVIVT00037165001 Flavanone 3-hydroxylase (F3H) 1.14.11.9 Flavonoid
1 VVTU7778_at GSVIVT00034070001 Flavonoid 3-monooxygenase 1.14.13.21 Flavonoid
4 VVTU6932_at GSVIVT00016437001 Flavonoid 3-monooxygenase 1.14.13.21 Flavonoid
4 VVTU25410_s_at GSVIVT00036466001 Flavonoid 3-monooxygenase 1.14.13.21 Flavonoid
7 VVTU6362_at GSVIVT00017654001 Flavonoid 3-monooxygenase 1.14.13.21 Flavonoid
13 VVTU35884_at GSVIVT00022300001 Flavonoid 3',5'-hydroxylase (F3'5'H) 1.14.13.88 Flavonoid
10 VVTU13083_at* GSVIVT00005344001 Anthocyanidin reductase (ANR) 1.3.1.77 Flavonoid
13 VVTU9453_at GSVIVT00000479001 Quercetin 3-O-methyltransferase 1 2.1.1.76 Flavonoid
1 VVTU39820_s_at GSVIVT00037967001 Chalcone synthase(CHS) 2.3.1.74 Flavonoid
5 VVTU15193_at GSVIVT00003466001 UDP-glucose:flavonoid 7-O-glucosyltransferase (UFGT) 2.4.1.237 Flavonoid
14 VVTU22370_at GSVIVT00033493001 UDP-glucose:flavonoid 7-O-glucosyltransferase (UFGT) 2.4.1.237 Flavonoid
13 VVTU17578_s_at* GSVIVT00014047001 UDP-glucose:flavonoid 3-O-glucosyltransferase (UFGT) 2.4.1.91 Flavonoid
3 VVTU15110_at GSVIVT00001621001 Flavonol 3-sulfotransferase 2.8.2.25 Flavonoid
1 VVTU3684_s_at GSVIVT00029440001 Chalcone flavanone isomerase (CHI) 5.5.1.6 Flavonoid
17 VVTU563_at GSVIVT00020652001 Chalcone isomerase (CHI) 5.5.1.6 Flavonoid
10 VVTU9073_x_at GSVIVT00009968001 UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase 2.4.1.238 Flavonoid
12 VVTU24324_at GSVIVT00024127001 Anthocyanidin 3-O-glucosyltransferase 2.4.1.115 Anthocyanin
18 VVTU35521_at GSVIVT00024993001 Anthocyanidin 3-O-glucosyltransferase 2.4.1.115 Anthocyanin
19 VVTU15768_at GSVIVT00037558001 Anthocyanidin 3-O-glucosyltransferase 2.4.1.115 Anthocyanin
20 VVTU14014_at GSVIVT00005849001 Anthocyanidin 3-O-glucosyltransferase 2.4.1.115 Anthocyanin
7 VVTU8698_at GSVIVT00008206001 Anthocyanidin rhamnosyl-transferase RHATR Anthocyanin
8 VVTU10613_at GSVIVT00026922001 Anthocyanidin rhamnosyl-transferase RHATR Anthocyanin
13 VVTU7774_at GSVIVT00011809001 UDP-rhamnose/rhamnosyltransferase RHATR Anthocyanin
5 VVTU8944_x_at GSVIVT00001860001 UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase RHGT1 Anthocyanin
12 VVTU14620_at GSVIVT00001853001 UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase RHGT1 Anthocyanin
16 VVTU15845_at GSVIVT00001851001 UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase RHGT1 Anthocyanin
17 VVTU15902_at GSVIVT00001859001 UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase RHGT1 Anthocyanin
18 VVTU36907_at GSVIVT00024130001 UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase RHGT1 Anthocyanin
3 VVTU5076_s_at GSVIVT00033502001 UDP-glucoronosyl/UDP-glucosyl transferase UGT75C1 UGT75C1 Anthocyanin
15 VVTU38572_at GSVIVT00025511001 CYP93A1 2-hydroxyisoflavanone synthase 1.14.13.86 Isoflavonoid
13 VVTU2075_at GSVIVT00019588001 CYP81E1 Isoflavone 2'-hydroxylase 1.14.13.89 Isoflavonoid
20 VVTU22627_at GSVIVT00019595001 CYP81E1 Isoflavone 2'-hydroxylase 1.14.13.89 Isoflavonoid
4 VVTU3973_at GSVIVT00026339001 2'-hydroxy isoflavone/dihydroflavonol reductase 1.3.1.45 Isoflavonoid
8 VVTU6973_at GSVIVT00003030001 Isoflavone methyltransferase 2.1.1.46 Isoflavonoid
  1. A Clusters in bold exhibit steady increase of transcript abundance post véraison; Clusters in italics show decrease of transcript abundance post véraison. Expression profiling of each cluster is shown in Figure 1. B Function annotation and pathway assignment of each gene were based on VitisNet (http://vitis-dormancy.sdstate.org/pathways.cfm). The genes (DFR, LDOX, ANR, UFGT) with asterisk have the same GSVIVT ID and display similar expression profiling as in qPCR.