Skip to main content

Table 1 Transcriptional profiles of genes in Norton berry skin that are associated with defense pathways

From: Berry skin development in Norton grape: Distinct patterns of transcriptional regulation and flavonoid biosynthesis

ClusterA Affymetrix ChipID Genoscope ID Function (VitisNet)B KEGG Pathway (VitisNet)
Up-regulation post véraison
1 VVTU11871_s_at GSVIVT00025506001 Polygalacturonase inhibiting protein PGIP1 PGIP Defense
12 VVTU6661_at GSVIVT00005104001 Dirigent   Defense
18 VVTU13759_at GSVIVT00038581001 Pathogenesis-related protein 1 PRP1 Defense
18 VVTU1755_at GSVIVT00033081001 Pathogenesis protein 10.1   Defense
18 VVTU39372_at GSVIVT00024739001 Dirigent protein   Defense
18 VVTU21514_x_at GSVIVT00024741001 Dirigent protein   Defense
18 VVTU8656_at GSVIVT00036870001 Epoxide hydrolase 2 3.3.2.10 Defense
13 VVTU10916_at GSVIVT00018587001 Ripening induced protein   Defense response
20 VVTU4789_at GSVIVT00007703001 NtPRp27 secretory protein   Defense response
1 VVTU10868_at GSVIVT00037825001 Disease resistance protein   Disease resistance
18 VVTU16881_at GSVIVT00028656001 Disease resistance protein (NBS-LRR class)   Disease resistance
20 VVTU7497_s_at GSVIVT00000261001 Disease resistance protein (TIR-NBS class)   Disease resistance
20 VVTU36452_at GSVIVT00038332001 TIR-NBS-LRR disease resistance   Disease resistance
12 VVTU40849_s_at GSVIVT00030517001 Major latex protein 22   Disease resistance
12 VVTU35326_at GSVIVT00002134001 Seed maturation protein PM41   Disease resistance
13 VVTU2601_at GSVIVT00018817001 PMR5 (POWDERY MILDEW RESISTANT 5)   Disease resistance
20 VVTU9483_at GSVIVT00000260001 TIR-NBS-LRR-TIR disease resistance protein   Disease resistance
20 VVTU2928_at GSVIVT00021517001 Hairpin inducing protein 1-like 9   Hypersensitive response
20 VVTU37592_at GSVIVT00023399001 Hairpin induced protein   Hypersensitive response
18 VVTU11329_at GSVIVT00030027001 SP1L1 (SPIRAL1-LIKE1)   Pathogen
18 VVTU1632_at GSVIVT00030524001 Bet v I allergen   Pathogenesis
Up-down-up regulation
19 VVTU4500_s_at GSVIVT00036464001 Viral-response family protein-like   Defense
19 VVTU7944_at GSVIVT00016484001 BREVIS RADIX 4   Disease resistance
Down-regulation post véraison
9 VVTU3745_s_at GSVIVT00024648001 Polygalacturonase inhibitor protein PGIP Defense
7 VVTU3256_at GSVIVT00024747001 Dirigent protein pDIR9   Defense
14 VVTU4542_at GSVIVT00016676001 Lachrymatory factor synthase   Defense
15 VVTU28352_at GSVIVT00024745001 Dirigent protein   Defense
14 VVTU2350_at GSVIVT00033031001 Epoxide hydrolase 3.3.2.10 Defense
17 VVTU2606_at GSVIVT00025834001 Epoxide hydrolase 2 3.3.2.10 Defense
3 VVTU34452_at GSVIVT00004842001 Disease resistance protein (TIR-NBS-LRR class)   Disease resistance
5 VVTU2751_s_at GSVIVT00033825001 Disease resistance protein   Disease resistance
7 VVTU20455_at GSVIVT00018767001 Receptor kinase TRKa   Disease resistance
7 VVTU21216_at GSVIVT00020681001 Disease resistance protein (NBS-LRR class)   Disease resistance
14 VVTU10907_at GSVIVT00011855001 HcrVf1 protein   Disease resistance
14 VVTU1732_at GSVIVT00025424001 Disease resistance responsive   Disease resistance
14 VVTU34204_s_at GSVIVT00025429001 Disease resistance responsive   Disease resistance
15 VVTU24464_at GSVIVT00026768001 Disease resistance protein (CC-NBS-LRR class)   Disease resistance
2 VVTU52_at GSVIVT00027396001 NDR1 (NON RACE-SPECIFIC DISEASE RESISTANCE)   Disease resistance
3 VVTU8917_at GSVIVT00033069001 Major allergen Pru ar 1   Disease resistance
5 VVTU29478_at GSVIVT00025399001 PMR5 (POWDERY MILDEW RESISTANT 5)   Disease resistance
9 VVTU5508_s_at GSVIVT00033067001 Major cherry allergen Pru av 1.0202   Disease resistance
14 VVTU30737_at GSVIVT00018816001 PMR5 (POWDERY MILDEW RESISTANT 5)   Disease resistance
3 VVTU2005_at GSVIVT00026172001 Hairpin induced 1   Hypersensitive response
5 VVTU10307_x_at GSVIVT00006738001 Hairpin induced 1   Hypersensitive response
14 VVTU14941_at GSVIVT00034176001 Hairpin induced 1   Hypersensitive response
15 VVTU16087_at GSVIVT00032401001 G protein protein gamma subunit (AGG2)   Pathogen defense
17 VVTU27983_at GSVIVT00023169001 Mlo3 K08472 Pathogen defense
17 VVTU7548_x_at GSVIVT00030529001 Bet v I allergen   Pathogenesis
  1. A Expression profiling of each cluster is shown in Figure 1. B Function annotation and pathway assignment of each gene were based on VitisNet (http://vitis-dormancy.sdstate.org/pathways.cfm)