Table 1 Transcriptional profiles of genes in Norton berry skin that are associated with defense pathways
ClusterA | Affymetrix ChipID | Genoscope ID | Function (VitisNet)B | KEGG | Pathway (VitisNet) |
|---|---|---|---|---|---|
Up-regulation post véraison | |||||
1 | VVTU11871_s_at | GSVIVT00025506001 | Polygalacturonase inhibiting protein PGIP1 | PGIP | Defense |
12 | VVTU6661_at | GSVIVT00005104001 | Dirigent | Â | Defense |
18 | VVTU13759_at | GSVIVT00038581001 | Pathogenesis-related protein 1 | PRP1 | Defense |
18 | VVTU1755_at | GSVIVT00033081001 | Pathogenesis protein 10.1 | Â | Defense |
18 | VVTU39372_at | GSVIVT00024739001 | Dirigent protein | Â | Defense |
18 | VVTU21514_x_at | GSVIVT00024741001 | Dirigent protein | Â | Defense |
18 | VVTU8656_at | GSVIVT00036870001 | Epoxide hydrolase 2 | 3.3.2.10 | Defense |
13 | VVTU10916_at | GSVIVT00018587001 | Ripening induced protein | Â | Defense response |
20 | VVTU4789_at | GSVIVT00007703001 | NtPRp27 secretory protein | Â | Defense response |
1 | VVTU10868_at | GSVIVT00037825001 | Disease resistance protein | Â | Disease resistance |
18 | VVTU16881_at | GSVIVT00028656001 | Disease resistance protein (NBS-LRR class) | Â | Disease resistance |
20 | VVTU7497_s_at | GSVIVT00000261001 | Disease resistance protein (TIR-NBS class) | Â | Disease resistance |
20 | VVTU36452_at | GSVIVT00038332001 | TIR-NBS-LRR disease resistance | Â | Disease resistance |
12 | VVTU40849_s_at | GSVIVT00030517001 | Major latex protein 22 | Â | Disease resistance |
12 | VVTU35326_at | GSVIVT00002134001 | Seed maturation protein PM41 | Â | Disease resistance |
13 | VVTU2601_at | GSVIVT00018817001 | PMR5 (POWDERY MILDEW RESISTANT 5) | Â | Disease resistance |
20 | VVTU9483_at | GSVIVT00000260001 | TIR-NBS-LRR-TIR disease resistance protein | Â | Disease resistance |
20 | VVTU2928_at | GSVIVT00021517001 | Hairpin inducing protein 1-like 9 | Â | Hypersensitive response |
20 | VVTU37592_at | GSVIVT00023399001 | Hairpin induced protein | Â | Hypersensitive response |
18 | VVTU11329_at | GSVIVT00030027001 | SP1L1 (SPIRAL1-LIKE1) | Â | Pathogen |
18 | VVTU1632_at | GSVIVT00030524001 | Bet v I allergen | Â | Pathogenesis |
Up-down-up regulation | |||||
19 | VVTU4500_s_at | GSVIVT00036464001 | Viral-response family protein-like | Â | Defense |
19 | VVTU7944_at | GSVIVT00016484001 | BREVIS RADIX 4 | Â | Disease resistance |
Down-regulation post véraison | |||||
9 | VVTU3745_s_at | GSVIVT00024648001 | Polygalacturonase inhibitor protein | PGIP | Defense |
7 | VVTU3256_at | GSVIVT00024747001 | Dirigent protein pDIR9 | Â | Defense |
14 | VVTU4542_at | GSVIVT00016676001 | Lachrymatory factor synthase | Â | Defense |
15 | VVTU28352_at | GSVIVT00024745001 | Dirigent protein | Â | Defense |
14 | VVTU2350_at | GSVIVT00033031001 | Epoxide hydrolase | 3.3.2.10 | Defense |
17 | VVTU2606_at | GSVIVT00025834001 | Epoxide hydrolase 2 | 3.3.2.10 | Defense |
3 | VVTU34452_at | GSVIVT00004842001 | Disease resistance protein (TIR-NBS-LRR class) | Â | Disease resistance |
5 | VVTU2751_s_at | GSVIVT00033825001 | Disease resistance protein | Â | Disease resistance |
7 | VVTU20455_at | GSVIVT00018767001 | Receptor kinase TRKa | Â | Disease resistance |
7 | VVTU21216_at | GSVIVT00020681001 | Disease resistance protein (NBS-LRR class) | Â | Disease resistance |
14 | VVTU10907_at | GSVIVT00011855001 | HcrVf1 protein | Â | Disease resistance |
14 | VVTU1732_at | GSVIVT00025424001 | Disease resistance responsive | Â | Disease resistance |
14 | VVTU34204_s_at | GSVIVT00025429001 | Disease resistance responsive | Â | Disease resistance |
15 | VVTU24464_at | GSVIVT00026768001 | Disease resistance protein (CC-NBS-LRR class) | Â | Disease resistance |
2 | VVTU52_at | GSVIVT00027396001 | NDR1 (NON RACE-SPECIFIC DISEASE RESISTANCE) | Â | Disease resistance |
3 | VVTU8917_at | GSVIVT00033069001 | Major allergen Pru ar 1 | Â | Disease resistance |
5 | VVTU29478_at | GSVIVT00025399001 | PMR5 (POWDERY MILDEW RESISTANT 5) | Â | Disease resistance |
9 | VVTU5508_s_at | GSVIVT00033067001 | Major cherry allergen Pru av 1.0202 | Â | Disease resistance |
14 | VVTU30737_at | GSVIVT00018816001 | PMR5 (POWDERY MILDEW RESISTANT 5) | Â | Disease resistance |
3 | VVTU2005_at | GSVIVT00026172001 | Hairpin induced 1 | Â | Hypersensitive response |
5 | VVTU10307_x_at | GSVIVT00006738001 | Hairpin induced 1 | Â | Hypersensitive response |
14 | VVTU14941_at | GSVIVT00034176001 | Hairpin induced 1 | Â | Hypersensitive response |
15 | VVTU16087_at | GSVIVT00032401001 | G protein protein gamma subunit (AGG2) | Â | Pathogen defense |
17 | VVTU27983_at | GSVIVT00023169001 | Mlo3 | K08472 | Pathogen defense |
17 | VVTU7548_x_at | GSVIVT00030529001 | Bet v I allergen | Â | Pathogenesis |