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Table 7 Up- or down-regulation of genes involved in protein degradation by proteases or proteosomal machenery in transgenic HC-Pro plants

From: HC-Pro silencing suppressor significantly alters the gene expression profile in tobacco leaves and flowers

Leaf

  

EST/mRNA

Fold

Description

EB438380

27.5

Solanum lycopersicum unknown trypsin inhibitor-like protein precursor

FG637943

14.2

Arabidopsis thaliana FKF1 (FLAVIN-BINDING, KELCH REPEAT, F BOX 1)

TA13877_4097

10.9

Nicotiana glutinosa putative proteinase inhibitor mRNA

TA12601_4097

4.6

Acyrthosiphon pisum ubiquitin ligase E3

CV019298

3.3

Solanum tuberosum metallocarboxypeptidase inhibitor IIa

CV018626

3.0

Ricinus communis Serine carboxypeptidase, putative, mRNA, AT3 g45010/F14D17_80

FG643489

2.8

Arabidopsis thaliana AtPP2-B13 (Phloem protein 2-B13); carbohydrate binding F-box protein 3

TA17751_4097

2.6

Development and cell death domain, the KELCH repeats and ParB domain.

CV018465

2.4

Subtilisin-like protease related cluster

BP133434

2.4

Ricinus communis protein binding protein, putative, mRNA (ubiquitin protein ligase)

TA17959_4097

2.3

Mirabilis jalapa, ubiquitin ligase

FG635491

2.1

Ricinus communis RING-H2 finger protein ATL2B, putative, mRNA

BP530000

2.1

Kelch repeat-containing F-box protein-like

FG137301

2.1

Tomato ATP-dependent protease (CD4A)

TA18536_4097

0.2

Arabidopsis thaliana LKua-ubiquitin conjugating enzyme, F19K23.12 protein

CV019784

0.4

Lycopersicum esculentum mRNA for serine protease, SBT1

EB429242

0.4

LIM, zinc-binding; Ubiquitin interacting motif; Peptidase M, neutral zinc metallopeptidases,

  1. Statistical significance was tested using Student's t-test (p < 0.05).
  2. Fold change is indicated as a ratio of HC-Pro/WT calculated from normalized median intensity values (n = 3).