Skip to main content

Table 3 Up- or down-regulation of transcripts in HC-Pro expressing plants

From: HC-Pro silencing suppressor significantly alters the gene expression profile in tobacco leaves and flowers

Defense related transcripts Leaf

Stress related transcripts Leaf

EST/mRNA

Fold

Description

EST/mRNA

Fold

Description

EH615198

6.4

Nicotiana tabacum nictaba mRNA (NT1)

TA14956_4097

3.8

Tamarix Putative stress-responsive protein

FG636567

3.8

Nicotiana tabacum mRNA for P-rich protein NtEIG-C29

FG156808

3.6

Nicotiana tabacum 1-D-deoxyxylulose 5-phosphate synthase mRNA (DXS1)

EB433973

2.8

Parsley PcPR1-3 mRNA for pathogenesis-related protein type B

CV016057

2.9

Arabidopsis thaliana cold-regulated 413-plasma membrane 2 mRNA COR413-PM2

S44869

2.4

Nicotiana tabacum Endochitinase A precursor

EB441160

2.9

Solanum lycopersicum dxs2 gene for 1-deoxy-D-xylulose 5-phosphate synthase

X12739

2.1

Nicotiana tabacum Pathogenesis-related protein R major form precursor

EB435759

2.8

Ipomoea nil In04 mRNA for caffeoyl-CoA O-methyltransferase

TA14009_4097

0.5

Nicotiana tabacum Chitinase 134

TA12600_4097

2.8

Solanum tuberosum Low temperature and salt responsive protein

EB425556

0.5

Arabidopsis thaliana beta-1,3-glucanase-related mRNA

EB451519

2.8

Solanum lycopersicum geranylgeranyl pyrophosphate synthase 1 (GGPS1)

EH624302

0.5

Arabidopsis thaliana callose synthase 1 mRNA CALS1

EB445705

2.7

Vitis vinifera RD22-like protein mRNA

Defense related transcripts Flower

DV161729

2.1

Arabidopsis thaliana snf1-related protein kinase 2.2, SNRK2.2

FG167555

3.8

Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 111B (ACRE111B) AP2-DOMAIN

FG633784

2.0

Solanum lycopersicum anthocyanin acyltransferase mRNA, Jasmonic acid inducible

AB041516

3.5

Nicotiana tabacum P-rich protein EIG-I30

EB680165

0.3

Arabidopsis thaliana SIP3 (SOS3-INTERACTING PROTEIN 3)

TA14524_4097

3.0

Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 65 (ACRE65) mRNA,

EB433693

0.4

Arabidopsis thaliana AFP1 (ABI FIVE BINDING PROTEIN)

FG640154

2.6

Nicotiana tabacum mRNA for basic pathogenesis-related protein Thaumatin

TA14058_4097

0.4

Ipomoea nil CHS-D mRNA for chalcone synthase

FG635113

2.5

Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 20 (ACRE20) mRNA; EF-hand calcium binding protein

EB439278

0.4

Nicotiana tabacum NtERD10B mRNA for dehydrin

TA13004_4097

2.2

Nicotiana tabacum mRNA for hin1 gene: Harpin inducing protein

EB437158

0.5

Ricinus communis leuco-anthocyanidin dioxygenase mRNA

TA15227_4097

2.1

Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 76; NDR1/HIN1

DW003496

0.5

Ricinus communis Salt-tolerance protein

AB127582

2.1

Nicotiana tabacum Harpin inducing protein 1-like 18 DOMAIN: LEA_2

EB438355

0.5

Arabidopsis thaliana ATHK1 (histidine kinase 1/ osmosensor)

   

EB438355

0.5

Catharanthus roseus cold inducible histidine kinase 1 (iK1) mRNA

  1. HC-Pro expression alters significantly (p < 0.05) expression of several genes related to defense and stress responses.
  2. Fold change is indicated as a ratio of HC-Pro/WT calculated from normalized median intensity values (n = 3).