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Table 3 Up- or down-regulation of transcripts in HC-Pro expressing plants

From: HC-Pro silencing suppressor significantly alters the gene expression profile in tobacco leaves and flowers

Defense related transcripts Leaf Stress related transcripts Leaf
EST/mRNA Fold Description EST/mRNA Fold Description
EH615198 6.4 Nicotiana tabacum nictaba mRNA (NT1) TA14956_4097 3.8 Tamarix Putative stress-responsive protein
FG636567 3.8 Nicotiana tabacum mRNA for P-rich protein NtEIG-C29 FG156808 3.6 Nicotiana tabacum 1-D-deoxyxylulose 5-phosphate synthase mRNA (DXS1)
EB433973 2.8 Parsley PcPR1-3 mRNA for pathogenesis-related protein type B CV016057 2.9 Arabidopsis thaliana cold-regulated 413-plasma membrane 2 mRNA COR413-PM2
S44869 2.4 Nicotiana tabacum Endochitinase A precursor EB441160 2.9 Solanum lycopersicum dxs2 gene for 1-deoxy-D-xylulose 5-phosphate synthase
X12739 2.1 Nicotiana tabacum Pathogenesis-related protein R major form precursor EB435759 2.8 Ipomoea nil In04 mRNA for caffeoyl-CoA O-methyltransferase
TA14009_4097 0.5 Nicotiana tabacum Chitinase 134 TA12600_4097 2.8 Solanum tuberosum Low temperature and salt responsive protein
EB425556 0.5 Arabidopsis thaliana beta-1,3-glucanase-related mRNA EB451519 2.8 Solanum lycopersicum geranylgeranyl pyrophosphate synthase 1 (GGPS1)
EH624302 0.5 Arabidopsis thaliana callose synthase 1 mRNA CALS1 EB445705 2.7 Vitis vinifera RD22-like protein mRNA
Defense related transcripts Flower DV161729 2.1 Arabidopsis thaliana snf1-related protein kinase 2.2, SNRK2.2
FG167555 3.8 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 111B (ACRE111B) AP2-DOMAIN FG633784 2.0 Solanum lycopersicum anthocyanin acyltransferase mRNA, Jasmonic acid inducible
AB041516 3.5 Nicotiana tabacum P-rich protein EIG-I30 EB680165 0.3 Arabidopsis thaliana SIP3 (SOS3-INTERACTING PROTEIN 3)
TA14524_4097 3.0 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 65 (ACRE65) mRNA, EB433693 0.4 Arabidopsis thaliana AFP1 (ABI FIVE BINDING PROTEIN)
FG640154 2.6 Nicotiana tabacum mRNA for basic pathogenesis-related protein Thaumatin TA14058_4097 0.4 Ipomoea nil CHS-D mRNA for chalcone synthase
FG635113 2.5 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 20 (ACRE20) mRNA; EF-hand calcium binding protein EB439278 0.4 Nicotiana tabacum NtERD10B mRNA for dehydrin
TA13004_4097 2.2 Nicotiana tabacum mRNA for hin1 gene: Harpin inducing protein EB437158 0.5 Ricinus communis leuco-anthocyanidin dioxygenase mRNA
TA15227_4097 2.1 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 76; NDR1/HIN1 DW003496 0.5 Ricinus communis Salt-tolerance protein
AB127582 2.1 Nicotiana tabacum Harpin inducing protein 1-like 18 DOMAIN: LEA_2 EB438355 0.5 Arabidopsis thaliana ATHK1 (histidine kinase 1/ osmosensor)
    EB438355 0.5 Catharanthus roseus cold inducible histidine kinase 1 (iK1) mRNA
  1. HC-Pro expression alters significantly (p < 0.05) expression of several genes related to defense and stress responses.
  2. Fold change is indicated as a ratio of HC-Pro/WT calculated from normalized median intensity values (n = 3).