Figure 4

LD heat plots of ten candidate genes. Analysed sequences, including the promoter and complete coding sequences of ScCbf6 and ScCbf9b, and partial coding sequences of ScCbf12, ScCbf14, and ScCbf15; ScVrn1 was not included due to a lack of pairwise comparisons, since only one Indel was observed. Exons, and 5'- or 3'-flanking regions are represented by grey cylinders and black lines, respectively. White cylinders with dashed lines indicate non-amplified exons. Black triangles represent polymorphic sites starting from "SNP1" on the top of each graph. Each grid represents the strength of LD estimated by r² for each pairwise comparison between polymorphic sites with a minor allele frequency (MAF) > 0.05. The colour legend for r²values is given on the right side.